Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F17
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 1.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.8
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 2.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.2
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 26 3.2
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 4.2
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces... 25 4.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 5.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 5.6
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 25 7.3
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 7.3
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 7.3
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 9.7
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 1.8
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 KQLRIETSEMILTITVL--SALVTQASLTPLSNLTVAFINYEELSPLNNINSYEQLYDSV 182
++L IE +++ + + S V ++L +S+L E++S + L+D V
Sbjct: 720 EKLNIELLNLLINVVFVTESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKV 779
Query: 183 VVGDYKAAVMKTLRLENDGXGEVINLVVNRLLSEGKRNIVEYAYKLWNMFGTNIVQDHFP 362
G K E++ +V+ V L+S + A+KL + V D
Sbjct: 780 YTGTPK---------ESEAALDVLAWVDKALVSRKHSEGIPLAFKLLDTLNLQNVGDSSV 830
Query: 363 KEFRMFLNEDPVL 401
K + + +DP L
Sbjct: 831 KALSIIIKDDPAL 843
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 1.8
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -3
Query: 400 NTGSSFKNILNSFGK*SWTMFVPNMFHSL*AYSTMFLLPSESSLFTTRFITSPXPSFSN 224
+TG+ N L+S T ++PN S+ A ST L + S T+ TS PS S+
Sbjct: 528 STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASS 586
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 2.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 9 KQLRIETSEMILTITVLSALVTQAS--LTPLSNLTVAFINY--EELSPLNNINSYEQLYD 176
KQ S+ I + + S + S + L+ T A+I Y EE+ PLN N Y D
Sbjct: 312 KQKVFLQSKQIFCVPINSLMANSDSVDILELTRNTDAYIWYSVEEIDPLNTYNIYYTNED 371
Query: 177 SVVVGD 194
+ +V D
Sbjct: 372 TSIVLD 377
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 51 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 158
+V S T AS TPLS++ +PL ++NS
Sbjct: 443 SVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 60 SALVTQASLTPLSNLTVAFINYEELSPLNNINS 158
S T AS TPLS++ +PL+++NS
Sbjct: 430 STTATSASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 51 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 158
+V S T AS TPL+++ +PL ++NS
Sbjct: 345 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 380
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 51 TVLSALVTQASLTPLSNLTVAFINYEELSPLNNINS 158
+V S T AS TPL+++ +PL ++NS
Sbjct: 459 SVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNS 494
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 264 VNRLLSEGKRNIVEYAYKLWNMFGTNIVQDHFPKEF 371
V+RLL KRN+ + + + + NI++++ KEF
Sbjct: 117 VDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQKEF 152
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 300 VEYAYKLWNMFGTNIVQDHFPKEFR 374
V+ A W TN+ +D F KE+R
Sbjct: 324 VDEALVFWRKSFTNVTEDKFNKEYR 348
>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 386 VQKHSKLFWEVILDY 342
V KH KLFW V DY
Sbjct: 4 VGKHVKLFWNVYSDY 18
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 393 PVLIINKRDELALKLQLSMD 452
PV+++NK D L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 393 PVLIINKRDELALKLQLSMD 452
PV+++NK D L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 312 YKLWNMFGTNIVQDHFPKEFRMFLNE--DPVLIINKRDELALKLQL 443
Y+ W + G + K+ ++L E D + I+NKR ALK L
Sbjct: 207 YEYWTLKGLR----EYVKQPEVYLKEVLDSIAILNKRGPYALKYSL 248
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 117 INYEELSPLNNINSYEQLYDSVV 185
+N ++ L +INS E LYDS V
Sbjct: 21 LNDAKIKSLTSINSAEYLYDSFV 43
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 109 LHLLTTKSFRHSITSTLTN 165
+ +L ++ RHS+TST+TN
Sbjct: 284 IEVLYMENSRHSVTSTITN 302
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.2 bits (50), Expect = 9.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 255 NLVVNRLLSEGKRNIVEYAYKLWNMFGTNIVQDHFPKEFRMFLNEDPVLIINKRDELALK 434
NL+++ LS R I++ Y W TN+V F FR E VL+ E+ LK
Sbjct: 592 NLIISDSLSRIVRQILQNLYTEWVHEKTNLV---FATMFRTIFRE--VLLDGIASEVYLK 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,197
Number of Sequences: 5004
Number of extensions: 29466
Number of successful extensions: 115
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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