Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F16
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 30 0.19
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 27 1.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.1
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.4
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 25 7.2
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 25 7.2
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros... 25 9.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.5
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 350 NFAHTPTIGRNYNDLLFVLLRQHRRCGRHLFQTLMFHF 237
NF ++ +G+NY ++L +LLR + C Q+L F F
Sbjct: 525 NFVNSGKLGKNYTNILCLLLRLRQACNHP--QSLNFQF 560
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 427 PEHVNCPLPHVAQPCMFAIIVSSRIKILPTPPLLGETITTFSS 299
P H+ PH Q ++ + S RIK L P++G+ + + S
Sbjct: 456 PRHLRSIYPHAYQSYVWNRVASWRIKNLGDRPVVGDLVYSTES 498
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 270 TPSFPN-LDVPFLNIVFYCSLLQRKRFYSFK 181
T FP+ + + F I F C LL +KR+ FK
Sbjct: 1147 TSRFPSPIRLKFEKIYFPCFLLAKKRYVGFK 1177
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 192 KTFFVVIKNNKIQYLKMEHQGLEKMASTAPMLTKENEEKVVIVS 323
+TF + Q ++ Q LEKM L EN EK ++
Sbjct: 472 RTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIA 515
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 428 CKKSVVGVMLGEAIRXEILLPVSSTVXHLL 517
C+K ++ + R EI+LP + TV HLL
Sbjct: 367 CRKQLISIFK----RCEIMLPKTCTVAHLL 392
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 219 NKIQYLKMEHQGLEKMASTAPMLTKENEEKV 311
N I+ +K E Q L ST KEN+EK+
Sbjct: 48 NDIKVMKSEFQRLTHEKSTMLEKIKENQEKI 78
>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
protein phosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 156
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 127 DCVNINYIFFFNKMQITNFKRIKP 198
D N +YIF + + N R+KP
Sbjct: 81 DFKNFDYIFAMDSSNLRNINRVKP 104
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 217 TIKYNI*KWNIKV 255
T++YNI +WNIK+
Sbjct: 261 TLEYNIPEWNIKI 273
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 210 LQRKRFYSFKICNLHFIKKKNVINVDTINY 121
LQ +F S +I +L F K ++ VDT NY
Sbjct: 258 LQSFQFRSSQILSLCFRPKYKMLLVDTFNY 287
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 228 QYLKMEHQGLEKMASTAPMLTK---ENEEKVVIVSPNSGGVGKILIREDTII 374
QY + G K++ M+T+ E V ++S +GG+G L DT+I
Sbjct: 1469 QYKYLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVI 1520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,772
Number of Sequences: 5004
Number of extensions: 43881
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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