Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F16
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503...    31   0.78 
09_04_0475 - 17913982-17914772,17914830-17915156,17915323-179154...    28   4.1  
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350...    27   9.6  
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519...    27   9.6  

>03_06_0285 +
           32848085-32848988,32849057-32849245,32850136-32850311,
           32850569-32851141
          Length = 613

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 470 GLLPPA*RRPLIFYTGTRKLPSTTCSAALYVRYYSVLAY 354
           G +PPA    L  YTGT   P+TT + A ++R  S  +Y
Sbjct: 495 GPMPPAKAGRLTDYTGTPSSPATTTTNATFIRSPSHASY 533


>09_04_0475 -
           17913982-17914772,17914830-17915156,17915323-17915493,
           17915583-17915824,17915862-17916049,17916184-17916253,
           17916329-17916612
          Length = 690

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 219 CSLLQRKRFYSFKICNLHFIKKKNVINVD 133
           C L  +   YSF +  L  + +KNV N+D
Sbjct: 542 CELTDKSDVYSFGVVLLELLTRKNVFNLD 570


>11_04_0281 +
           15733505-15733647,15734366-15734443,15734835-15735077,
           15735868-15736012,15736234-15736293,15736376-15736471,
           15736651-15737067,15737824-15737964,15738043-15738213,
           15738394-15738651,15738741-15738889,15739060-15739557,
           15740147-15740420,15740631-15740696,15740891-15741057,
           15741413-15741497,15741673-15741732
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 222 YCSLLQRKRFYSFKICNLHFIKKKNVINVDTI 127
           Y  LL  +R+Y+F   ++  I +++ IN DTI
Sbjct: 889 YIKLLDEERWYNFDDSHVSAINEEDGINCDTI 920


>02_04_0314 -
           21950400-21950639,21951384-21951680,21951791-21951920,
           21952377-21952699,21953385-21953606,21953693-21954089,
           21954488-21954540
          Length = 553

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 201 FVVIKNNKIQYLKMEHQGLEKMASTAPMLTKENEEKV 311
           FVV     I  + M+ + LE++     + TKENEEK+
Sbjct: 180 FVVRYGTGIVCVSMKEEDLERLNLPLMVATKENEEKL 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,167
Number of Sequences: 37544
Number of extensions: 270883
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)