Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F16
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41272-2|AAA82447.1| 143|Caenorhabditis elegans Hypothetical pr... 34 0.057
U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical pr... 29 2.1
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006655-5|AAF39873.1| 172|Caenorhabditis elegans Hypothetical ... 29 2.1
U41023-2|AAA82341.1| 335|Caenorhabditis elegans Sphingomyelin s... 27 6.5
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 6.5
AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormo... 27 6.5
Z81463-11|CAC70074.2| 376|Caenorhabditis elegans Hypothetical p... 27 8.6
Z81463-10|CAB03854.4| 352|Caenorhabditis elegans Hypothetical p... 27 8.6
Z81129-8|CAC70106.2| 376|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81129-7|CAB03409.4| 352|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U41272-2|AAA82447.1| 143|Caenorhabditis elegans Hypothetical
protein T03G11.5 protein.
Length = 143
Score = 34.3 bits (75), Expect = 0.057
Identities = 16/75 (21%), Positives = 31/75 (41%)
Frame = -2
Query: 412 CPLPHVAQPCMFAIIVSSRIKILPTPPLLGETITTFSSFSFVNIGAVDAIFSKP*CSIFK 233
C + H Q C A++ + + T P T +TF++ + + +F+
Sbjct: 64 CEVKHCPQKCFTALVSGTTTALATTRPTTTATSSTFNNITLPENSKESQLLVNSYPHVFQ 123
Query: 232 YCILLFFITTKKVLF 188
C L+ F TK ++
Sbjct: 124 SCSLIIFFVTKMFIY 138
>U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical
protein ZK180.3b protein.
Length = 285
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 272 GRHLFQTLMFHF*ILYFIVLYYNEKGFILLKFV 174
G+ LF T + H I Y + +Y N GFI+ +
Sbjct: 244 GKFLFVTSIIHLIINYVLCVYMNSAGFIVANII 276
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 272 GRHLFQTLMFHF*ILYFIVLYYNEKGFILLKFV 174
G+ LF T + H I Y + +Y N GFI+ +
Sbjct: 392 GKFLFVTSIIHLIINYVLCVYMNSAGFIVANII 424
>AC006655-5|AAF39873.1| 172|Caenorhabditis elegans Hypothetical
protein H10D18.1 protein.
Length = 172
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 231 YLKMEHQGLEKMASTAPMLTKENEEKVVIVSPNSGGV 341
Y+KM H+ +E A+ A EN+ +++ PN GGV
Sbjct: 68 YIKM-HKMVESTATIALSEEIENKRTILVAEPNRGGV 103
>U41023-2|AAA82341.1| 335|Caenorhabditis elegans Sphingomyelin
synthase protein 2 protein.
Length = 335
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 275 CGRHLFQTLMFHF*ILYFIVLYYNEKGFILLKFV 174
CG +F I+YF+ L Y +G ++L+++
Sbjct: 202 CGDLMFSGHTVVLTIMYFVQLQYTPRGLVILRYI 235
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 436 FFTPEHVNCPLPHVAQPCMF-AIIVSSRIKILPTPPLL 326
F P+H N P+P + QP +F I+++++ + P L+
Sbjct: 46 FQPPQHANTPIPGI-QPNLFNPAIMAAQLNVFSNPQLM 82
>AC006699-1|ABA00171.1| 160|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 41 protein.
Length = 160
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 436 FFTPEHVNCPLPHVAQPCMF-AIIVSSRIKILPTPPLL 326
F P+H N P+P + QP +F I+++++ + P L+
Sbjct: 88 FQPPQHANTPIPGI-QPNLFNPAIMAAQLNVFSNPQLM 124
>Z81463-11|CAC70074.2| 376|Caenorhabditis elegans Hypothetical
protein C06B8.2b protein.
Length = 376
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 73 IVIKFKSTLKNRTETLVIDCVNINYIFFFNKM 168
I+++ K +KN ++ + + + N++F FN+M
Sbjct: 112 IMVELKRPVKNDSDIMFVSATSKNHLFNFNEM 143
>Z81463-10|CAB03854.4| 352|Caenorhabditis elegans Hypothetical
protein C06B8.2a protein.
Length = 352
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 73 IVIKFKSTLKNRTETLVIDCVNINYIFFFNKM 168
I+++ K +KN ++ + + + N++F FN+M
Sbjct: 112 IMVELKRPVKNDSDIMFVSATSKNHLFNFNEM 143
>Z81129-8|CAC70106.2| 376|Caenorhabditis elegans Hypothetical
protein C06B8.2b protein.
Length = 376
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 73 IVIKFKSTLKNRTETLVIDCVNINYIFFFNKM 168
I+++ K +KN ++ + + + N++F FN+M
Sbjct: 112 IMVELKRPVKNDSDIMFVSATSKNHLFNFNEM 143
>Z81129-7|CAB03409.4| 352|Caenorhabditis elegans Hypothetical
protein C06B8.2a protein.
Length = 352
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 73 IVIKFKSTLKNRTETLVIDCVNINYIFFFNKM 168
I+++ K +KN ++ + + + N++F FN+M
Sbjct: 112 IMVELKRPVKNDSDIMFVSATSKNHLFNFNEM 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,235
Number of Sequences: 27780
Number of extensions: 252246
Number of successful extensions: 664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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