Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F16
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 492 TGNNISXRIASPSIT 448
           TGNN++ RI S S+T
Sbjct: 871 TGNNVALRITSMSVT 885


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 457 QHNADH*FFTPEHVNCPLPHVAQPCMFA 374
           ++ AD+ +F P+    P+    +PC +A
Sbjct: 277 ENPADYRYFCPDGSKVPIDANTKPCTWA 304


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 457 QHNADH*FFTPEHVNCPLPHVAQPCMFA 374
           ++ AD+ +F P+    P+    +PC +A
Sbjct: 277 ENPADYRYFCPDGSKVPIDANTKPCTWA 304


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 457 QHNADH*FFTPEHVNCPLPHVAQPCMFA 374
           ++ AD+ +F P+    P+    +PC +A
Sbjct: 277 ENPADYRYFCPDGSKVPIDANTKPCTWA 304


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 DVPFLNIVFYCSLLQRKRFYSFKI 178
           D P+L+I F  ++ ++  FY+  I
Sbjct: 228 DEPYLDITFNITMRRKTLFYTVNI 251



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 337 PPLLGETITTFSSFSFVNIGAV 272
           PP++GET+  +   + V  GAV
Sbjct: 2   PPIIGETLRVWFLSALVVHGAV 23


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 DVPFLNIVFYCSLLQRKRFYSFKI 178
           D P+L+I F  ++ ++  FY+  I
Sbjct: 228 DEPYLDITFNITMRRKTLFYTVNI 251



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 337 PPLLGETITTFSSFSFVNIGAV 272
           PP++GET+  +   + V  GAV
Sbjct: 2   PPIIGETLRVWFLSALVVHGAV 23


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 4  VPCTCHRCTK 33
          +PC CH C K
Sbjct: 41 LPCKCHLCGK 50


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 249 DVPFLNIVFYCSLLQRKRFYSFKI 178
           D P+L+I F  ++ ++  FY+  +
Sbjct: 224 DEPYLDITFNITMRRKTLFYTVNL 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,190
Number of Sequences: 438
Number of extensions: 3108
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)