Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F15
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    29   0.82 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   1.4  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   3.3  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   4.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   4.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   5.8  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 196 ISSLSVDSGPVTNVRDEGTNRTSLNLNHEQDIDSTTDCNQICGCDRAYVFNETTHE 363
           ++SLS+   P  + R E  N+   NLNHE   +     + + G +  + F+E   E
Sbjct: 49  LNSLSISDVPSAHSRVEQWNQQVHNLNHELSSNKNRISSNVEGYEDDFSFDEEGEE 104


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 433 KYEDHDIVNDDGMAKRIRLEAEKVF 507
           +YED D+VN    A+R+R + E+V+
Sbjct: 124 QYEDEDMVNGLQYARRLRTQFERVY 148


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 355 THECDLDMEYILKTASMQMSEEKSGYKYEDHDIVND 462
           T E  +D  Y+LKT+   +S ++   KY + D++ +
Sbjct: 240 TSESAVDWNYLLKTSDDLLSVDELKLKYSNPDLIKN 275


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 373 PGHIRVSSH*KRKLCHNRIFGYNQLYCR 290
           P +IRV SH K++   + +F   +LYC+
Sbjct: 132 PKYIRVLSHNKKEKSLDHLFLAQELYCK 159


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 388 LKTASMQ--MSEEKSGYK-YEDHDIVNDD 465
           LK AS Q   +E K+ Y  YED +I NDD
Sbjct: 418 LKNASKQSIQNENKASYSSYEDSEIQNDD 446


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 405 HRSGLQYVFHVQVTFVCRLIENVSSVTTAYLVT 307
           HR+G +Y  +    F C +++++  VT A   T
Sbjct: 374 HRTGTKYRAYPTYDFACPIVDSLEGVTHALRTT 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,838
Number of Sequences: 5004
Number of extensions: 46996
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)