Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F15
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657...    30   2.0  
04_01_0092 + 985063-985752                                             29   3.4  
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380...    29   4.5  
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    28   6.0  
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489...    28   6.0  
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432...    28   7.9  

>03_02_0226 -
           6569657-6570388,6570461-6570748,6570846-6571303,
           6571694-6571828,6571829-6572084,6572229-6572451,
           6572533-6572661,6573570-6573775
          Length = 808

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +1

Query: 238 RDEGTNRTSLNLNHEQDIDSTTDCNQICGCDRAYVFNETTHECDLDMEYILKTASMQMS- 414
           RDE +N     LN  +++    +C+Q+    +A V+ ET H   +   ++LK A   +  
Sbjct: 296 RDECSNDVQKTLNFFREMQCRNNCHQMEVAIKA-VWPETIHR--VCKWHVLKNAKENLGN 352

Query: 415 --EEKSGYKYEDHDIVND 462
              ++S +K E H ++N+
Sbjct: 353 IYSKRSSFKQEFHRVLNE 370


>04_01_0092 + 985063-985752
          Length = 229

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 173 INTL*HILISLQFTTKTESSRNNLYQ-GFKNSFSNFC 66
           I+ + H +I+  FTT T+ S NN Y+ GF   F +FC
Sbjct: 139 ISFINHKIINKFFTT-TKDSNNNYYRPGFHRLFQHFC 174


>11_06_0334 +
           22437187-22437322,22437430-22437515,22437927-22438073,
           22438166-22438274,22439510-22439633,22439727-22439752,
           22439774-22440000,22440084-22440185
          Length = 318

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 328 HNRIFGYNQLYCRYLVHDLS*EKSDWFPHPL 236
           H  I     L   Y+V D+  E++DW P PL
Sbjct: 274 HYHILAKRMLTKEYVVEDVDGERADWCPPPL 304


>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/94 (23%), Positives = 44/94 (46%)
 Frame = +1

Query: 310 NQICGCDRAYVFNETTHECDLDMEYILKTASMQMSEEKSGYKYEDHDIVNDDGMAKRIRL 489
           NQ+ G  R+      + EC +D+  +    +++++E+K       + +++   +    +L
Sbjct: 429 NQLHGAIRSSWVQRRSKECHVDVRIVDDEVNIKLTEKKKA-----NSLLHAAKVLDEFQL 483

Query: 490 EAEKVFKGIIISVILFMASASLCAISACVYCCHI 591
           E   V  GII    +FM +  +   SA VY C +
Sbjct: 484 ELIHVVGGIIGDHHIFMFNTKVSEGSA-VYACAV 516


>03_05_0996 -
           29547974-29547977,29548442-29548620,29548827-29548905,
           29549556-29549577,29550370-29550439,29550589-29550667,
           29551252-29551268,29552214-29552295,29553540-29553630,
           29554354-29554498,29554653-29554964
          Length = 359

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 160 YKVLICYIF--YFLISSLSVDSGPVT 231
           YKVL+CY F  +F +SS+  D  P T
Sbjct: 209 YKVLMCYTFLLHFSLSSIGNDEQPTT 234


>09_03_0079 +
           12142390-12142459,12142792-12143006,12143050-12143268,
           12143345-12143932
          Length = 363

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 378 GIHIEDRFDANERRKKRVQI*RSRYCERR 464
           G+  +DR DA ERR +RV+  R R   RR
Sbjct: 317 GVRGQDRVDAGERRPERVRQRRHREVGRR 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,011
Number of Sequences: 37544
Number of extensions: 251301
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)