Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F14
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...   101   7e-23
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    36   0.007
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    29   0.45 
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.4  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   1.8  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   4.2  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   5.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   7.3  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   7.3  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   9.7  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   9.7  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   9.7  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   9.7  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score =  101 bits (243), Expect = 7e-23
 Identities = 56/140 (40%), Positives = 82/140 (58%)
 Frame = +2

Query: 56  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTG 235
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + ++D+FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60

Query: 236 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 415
           +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+YSSS D L+++  G+ 
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114

Query: 416 KYIQATDLSEASQEAVEEKL 475
             IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 27/86 (31%), Positives = 44/86 (51%)
 Frame = +2

Query: 122 RYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 301
           R  +  I +E   DV+T+  ++   +S   D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 302 KKQKLFLMSWCPDTAKVKKKMLYSSS 379
           KK  L L+S+ P+ A V++KMLY+SS
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +2

Query: 311 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 463
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 287 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 466
           T++      LF++ W P        M+Y+S+     + +  V K  +A D  + + EAV+
Sbjct: 79  TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137

Query: 467 EKL 475
           E L
Sbjct: 138 EFL 140


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 376 ARVQHLLLDLGGVWAPRH*EQFLFLARLRCTLALMRVFKIEE 251
           A ++ LLL +     PR  ++ +   R+ CT  L  VF++EE
Sbjct: 93  ASLEELLLKIFN--GPRSDKELILTIRIMCTFCLASVFQVEE 132


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 330 HDIRNNFCFLLASDVPWH*CVYSKSKRPYLHSPVPPFCRSSRKLSYSALRPPTV 169
           HD+ ++  +++ S   +H C  ++S  P  HS  PP            LRPP V
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFP--HSHHPPLHNPLPVSCQPVLRPPPV 158


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
 Frame = +2

Query: 83  KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYGLFDF 262
           K + + ++ + K ++     +D K+ D + +  +  EY SF ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 263 EYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLS 442
           +   +  G    S+K    ++      A V K      ++   +K++    K ++  +  
Sbjct: 167 Q--KKVHGPPALSEKPGKCILK-DKTNAHVNKIPQDEVNYSLPQKNITIFSKELKENEFE 223

Query: 443 EASQ-EAVEEKLRATD 487
             ++ E  EEK + ++
Sbjct: 224 SINEGETEEEKAKTSN 239


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 377 SFDALKKSLVGVQKYIQATDLSEASQ 454
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 157  LFLVANVEHHVAVFLILFY--FFVCRFASVRYCHTRRHFLMLKHVKIAPL 14
            +F++A + +   +F+IL    FF+ R+  V Y  T R    L  V  +PL
Sbjct: 1031 VFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 450 DASERSVACMYFCTPTRDFFSASKELEY 367
           D+ + S  C + C  T+DF S S  + +
Sbjct: 189 DSGDDSFKCSFLCGDTKDFVSCSNNVPF 216


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 62  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGR 184
           VT  D  KT  +  +K  KH+ V  YIR  K +D   +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 220 LQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHTRRHFLM 41
           +QV EK +V G      F   L       H + +FL+   ++ CR  SVR     R  L+
Sbjct: 271 VQVGEKCVVMGQVVPVNFKFTLLGEVKF-HKLRLFLMERRYYYCRQRSVRRKEKTRQLLL 329


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 267 YSKSKRPYLHSPVPPFCRSSRKLSYSALRPPTVSTS 160
           Y+KS++ ++ S   P C + + LS S++   T +T+
Sbjct: 289 YAKSQKKWIQSRFLPMCLAQQDLSPSSILFSTTNTT 324


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 96  KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRR 224
           K+ + + N+A    TFA      SKP+  V+P++  F+ T  R
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS-PFTSTLSR 305


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -3

Query: 350 PW--RCLGTTTLGTISVSCSPPMYPGTDAC 267
           PW  +C+    LG I+  CS P   G   C
Sbjct: 122 PWTKKCMNCGLLGHIAARCSEPRKRGPRVC 151


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 65  TVSDACKTTYEEIKKDKKHRYV 130
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 501 DAFSSPLNSPLTHTLRTT 554
           ++FSSPL++P  HT+ +T
Sbjct: 258 NSFSSPLDNPALHTVDST 275


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 4/143 (2%)
 Frame = +2

Query: 74  DACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGG----RNAEYDSFLEDLQKGGTGEC 241
           D+  ++ +E  ++KK +   F  RD++++ ++        RN          +K    E 
Sbjct: 56  DSLLSSIKETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTPRNRTQIIDARSTRKDTENES 115

Query: 242 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 421
                +F+   Q   T  A+K     +    P T    K  + ++   A KK + G +KY
Sbjct: 116 -LRKNNFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKY 174

Query: 422 IQATDLSEASQEAVEEKLRATDR 490
               + S    +  E K R  DR
Sbjct: 175 FDVINDSNVENKE-ETKDRNLDR 196


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 397  FLQRIEGARVQHLL 356
            F+QRI G R++HLL
Sbjct: 1202 FVQRIRGGRIRHLL 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,798
Number of Sequences: 5004
Number of extensions: 51962
Number of successful extensions: 193
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)