Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F10
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.2  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    25   3.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   5.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   6.7  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   6.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   6.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   8.9  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 57  LVIGNTANRVKLANHTDVQYNAIPFIKR-----VKYFFYHNSIQSYPGHPSA 197
           LV GN  +RV + + T +  N++PF K      +++    + ++SY   PS+
Sbjct: 818 LVFGNMEDRVIIHSVTRINENSVPFNKNLLPHSLEFILKCSKVKSYDISPSS 869


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 172 RVIQGIQALDNLHSKATINITAGGVGHTFVNL 267
           +V   IQ +DNL  K    I  GG+  TF+ +
Sbjct: 213 KVADKIQLIDNLLDKVNRLIICGGMAFTFLKV 244


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 85  SNWPITLTFNTTLYLSSRELNISSITTRYRVIQGIQALDN-LHSKATINI 231
           S WP   +F+ +  ++S +++ISS  +  +  + I+ L   L +  TIN+
Sbjct: 356 STWPTKRSFSMSEIVTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINL 405


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 216 SHNQYHSGRRRSHIRQSSNEKREGERPR 299
           S N+ HS  +R H R+S    R   R R
Sbjct: 188 SDNEQHSSDKREHSRRSYRNDRNNWRER 215


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 161 VIEEIFNSLDERYSVVLNVSVIGQFDSV 78
           VI E F    E+Y  + N SV G FD++
Sbjct: 562 VITENFIQSAEQYLALQNTSVFGTFDAL 589


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 157 ITTRYRVIQGIQALDNLHSKATINITAGGVGHTFVNLR 270
           +T +   I+GI   D L   A I+ TAGG+G    N+R
Sbjct: 221 VTMKDDSIEGIY--DTLKMCAMISKTAGGIGINIHNIR 256


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 248  PTPPAVILIVALLCRLSSAWMPWITLYRVVIEEIFNSL 135
            P+P  V++ + L   + SA+  WI   + +I++  N +
Sbjct: 1720 PSPTGVLIGIDLCYNMHSAYGNWIPGMKPLIQQSMNKI 1757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,246
Number of Sequences: 5004
Number of extensions: 29759
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)