Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F10
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 28 2.9
11_01_0162 - 1330878-1331012,1331379-1331448,1331599-1331762,133... 28 3.8
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450... 28 3.8
12_01_0161 - 1215892-1216026,1216393-1216462,1216623-1216786,121... 27 5.0
04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889... 27 5.0
12_01_0549 + 4396159-4397327,4397341-4398353,4398609-4398676,439... 27 6.6
06_01_0347 + 2514831-2515068,2515126-2515304,2515514-2515747,251... 27 6.6
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 27 8.7
03_03_0086 + 14345649-14347190 27 8.7
01_03_0171 - 13419944-13421362 27 8.7
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 121 LYLSSREL-NISSITTRYRVIQGIQALDNLHSKATINITAG 240
L S R + N+ + ++ ++G+ +DNL S +++TAG
Sbjct: 630 LVFSERAMGNLERLDMKFNTLEGVFGMDNLASLREVHMTAG 670
>11_01_0162 -
1330878-1331012,1331379-1331448,1331599-1331762,
1332879-1332919,1333068-1333160,1333250-1333337,
1333615-1333668,1333759-1333874,1334059-1334136,
1334280-1334430,1334500-1334610
Length = 366
Score = 27.9 bits (59), Expect = 3.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 224 IVALLCRLSSAWMPWITLYRVVIEEIFNSLDERYSVVLNVSVIGQFDSV----CSITYH* 57
++A LC SA P +L ++FN+ + R V+ SV+G+ + CS TY
Sbjct: 67 LLADLCAAKSAGSPLSSLLARGQCQLFNNTEARRKVIDTASVLGKTTGLVLVDCSATYDT 126
Query: 56 M*SLRQKHDGG 24
+ L+ D G
Sbjct: 127 VGMLKDAVDCG 137
>07_03_1217 -
24943466-24943828,24944207-24944374,24944941-24945009,
24945091-24945197,24945846-24945980,24946090-24946195,
24946758-24946794,24949795-24949832
Length = 340
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +3
Query: 162 NSIQSYPGHPSAGQPA**SHNQYHSGRRRSHIR---QSSNEKREGERPRL---*HRH 314
NS P P+A +P + QYH+ RR IR ++ N+ +G +P L HRH
Sbjct: 174 NSRVPLPVEPAAEEPIFVNAKQYHAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRH 230
>12_01_0161 -
1215892-1216026,1216393-1216462,1216623-1216786,
1217856-1217896,1218044-1218136,1218226-1218313,
1218520-1218573,1218656-1218771,1218964-1219041,
1219171-1219321,1219399-1219509
Length = 366
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 224 IVALLCRLSSAWMPWITLYRVVIEEIFNSLDERYSVVLNVSVIGQFDSV----CSITYH* 57
++A LC SA P +L ++FN+ + R V+ SV+G+ + CS TY
Sbjct: 67 LLADLCAAKSAGSPLSSLLSRGQCQLFNNPEARRKVIDTASVLGKTTGLVLVDCSATYDT 126
Query: 56 M*SLRQKHDGG 24
+ L+ D G
Sbjct: 127 VGMLKDAVDRG 137
>04_04_1614 +
34786296-34786315,34787432-34788347,34788426-34788950,
34789065-34789442,34790435-34790740
Length = 714
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 79 TESNWPITLTFNTTLYLSSRELNISSITTRYRVIQGIQALDNLHSKATI 225
T+ + + L+ + YL+SR LN++ +TT Y + ++A+D+ A +
Sbjct: 350 TDPSDGVALSTSILKYLASR-LNLAIVTTHYADLSRLKAVDDRFENAAM 397
>12_01_0549 +
4396159-4397327,4397341-4398353,4398609-4398676,
4399229-4399291
Length = 770
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 242 PPAVILIVALLCRLSSAWMPWITLYRVVIEEIFNSLDERYSVVLNVSVI 96
PP IVA +C + W +++ I+E F+S++ S+ L+ + I
Sbjct: 707 PPLRSEIVAYMCNATGGTSCWSSVHPDEIDEEFDSVESSCSIDLDTNHI 755
>06_01_0347 +
2514831-2515068,2515126-2515304,2515514-2515747,
2515882-2516137,2516300-2516496
Length = 367
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 42 AEGSHLVIG-NTANRVK-LANHTDVQYNAIPFIKRVKYF-FYHNSIQSYPGHPSA 197
A G +L+IG N A+ +HT + Y+AIP ++++YF Y + + + G A
Sbjct: 113 ASGKNLLIGANFASAGSGYYDHTALLYHAIPLSQQLEYFKEYQSKLAAVAGSSQA 167
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 26.6 bits (56), Expect = 8.7
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 10 LPLSYPPSCFWRRDH-I***VILQTESNWPITLTFNTTLYLSSRELNISSITTRYRVI-- 180
LP+ Y +C W RD+ I +++ T+ +L + + E+ + S R + +
Sbjct: 738 LPMRYQEACSWSRDNKIDLLLVVMTDDKNNASL-YGDVKRICETEIGVLSQCCRAKQVYK 796
Query: 181 -QGIQALDNLHSKATINITAGGVGHTFVNL 267
+ +Q N+ K IN AGG F+N+
Sbjct: 797 ERNVQYCANVALK--INAKAGGRNSVFLNV 824
>03_03_0086 + 14345649-14347190
Length = 513
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 155 EEIFNSLDERYSVVLNVSVIG 93
EEIFN++DE+ VV N V G
Sbjct: 213 EEIFNTMDEKDVVVYNAMVEG 233
>01_03_0171 - 13419944-13421362
Length = 472
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 239 PAVILIVALLCRLSSAWMPWITLY 168
P V++I A+LC ++ W+ W L+
Sbjct: 232 PYVLVIAAVLCVVALVWLAWPFLF 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,465
Number of Sequences: 37544
Number of extensions: 193387
Number of successful extensions: 472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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