Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F10
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-12|CAB04880.1|  622|Caenorhabditis elegans Hypothetical p...    27   4.5  
AL032665-2|CAA21772.1|  622|Caenorhabditis elegans Hypothetical ...    27   4.5  
AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical...    27   7.9  
AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z82059-12|CAB04880.1|  622|Caenorhabditis elegans Hypothetical
           protein T27E9.7 protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 209 CRLSSAWMPWITLYRVVIEEIFNSLD 132
           CR+S AW+ W   + ++++E  N LD
Sbjct: 521 CRVSFAWLAWQQPHLLLLDEPTNHLD 546


>AL032665-2|CAA21772.1|  622|Caenorhabditis elegans Hypothetical
           protein T27E9.7 protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 209 CRLSSAWMPWITLYRVVIEEIFNSLD 132
           CR+S AW+ W   + ++++E  N LD
Sbjct: 521 CRVSFAWLAWQQPHLLLLDEPTNHLD 546


>AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22b protein.
          Length = 272

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 224 IVALLCRLSSAWMPWITLYRVVIEEIFNSLDERYS 120
           ++AL+ RLS    PW   + VV+E+ F S+   ++
Sbjct: 215 VIALVVRLS---YPWARYWAVVVEQFFMSIANMFT 246


>AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22a protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 224 IVALLCRLSSAWMPWITLYRVVIEEIFNSLDERYS 120
           ++AL+ RLS    PW   + VV+E+ F S+   ++
Sbjct: 215 VIALVVRLS---YPWARYWAVVVEQFFMSIANMFT 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,392,141
Number of Sequences: 27780
Number of extensions: 168563
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)