Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F08
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   2.7  
12_02_0412 - 18799217-18801061                                         28   3.6  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    27   8.3  

>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 26  ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 115
           A  N P +A   N N   G ++Y+F DK G
Sbjct: 385 AESNTPALARTSNLNEELGQVEYIFSDKTG 414


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 91  VYSATDSVEVGYISDIWHISGGESLRCDVV 2
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 101 KDKIGASATAAHTDFINRNDYSLDGKLNLFKSPD 202
           +D +  +  A  T    R D  +DGKL++ +SPD
Sbjct: 224 EDFVDEAGNAYETACSERRDNDMDGKLHVAESPD 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,476,901
Number of Sequences: 37544
Number of extensions: 193486
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)