Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F07
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    27   1.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   4.6  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   4.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   4.6  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   6.1  

>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 330 CVCHTRA---RDPFLSIRTHNTIAWCARAPHISMYL 232
           C+ + R    +D F+  R +NTI W +R P +  Y+
Sbjct: 26  CILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYI 61


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 196 YGNLVTTFTSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 68
           YG     +T+S  SS+V  P  P    P  +    + N+S+ S
Sbjct: 321 YGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSS 363


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 355 VTRETSQVVCVSHQGSGSLSLYPHAQYNCMVRARTSHIYVSID 227
           + R+   V  V   GS +L  YPH    C++ A  S+    I+
Sbjct: 257 IVRDLDLVNTVWPPGSFALGEYPHVDTYCLMSAENSYTEFHIE 299


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 221 LMILPQVPLRKPCYDFYFL*MIKFGQLP 138
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 379 TMFSTCAIVARHSLVAECARDTALF 453
           T + T A + RH+L   C  DTA+F
Sbjct: 368 TAYYTKAKLMRHNLPGSCVLDTAVF 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,899
Number of Sequences: 5004
Number of extensions: 45881
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)