Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_F07
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594... 30 1.5
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 29 2.7
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 28 4.7
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 4.7
09_02_0330 + 7321031-7321231,7321313-7321434,7321461-7322135,732... 27 8.2
05_07_0062 + 27423081-27423287,27423372-27423449,27423548-274235... 27 8.2
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 27 8.2
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 27 8.2
>05_04_0110 +
18058821-18058900,18059119-18059182,18059351-18059437,
18059521-18059598,18060105-18060201,18060817-18060860,
18061071-18061257,18061324-18061406
Length = 239
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 161 FRGSKSRNKVSVGEPAEGSLTCVDRYIDM*GARAHHAIVL 280
++ K+ V +GE A VDRY + G+++HH I L
Sbjct: 3 YQHGKTHQNVVMGERARVVRCAVDRYFLLDGSKSHHIICL 42
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 139 PATPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLL 2
P PT PP PKT+ + + SSDG R + + S YD R L
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTL 70
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 188 VSVGEPAEGSLTCVDRYIDM*GARAHHAIVLCVRIERKGSRAL 316
V +G PA S V++ + G H A+ +C+ I+++ + L
Sbjct: 388 VRIGTPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLL 430
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 280 VRADREKGIPSPGVTHTQLGWFPASRGRTRP 372
+RAD EK I P VT + W P R RT P
Sbjct: 1449 LRADAEKNINKPIVTFEEKQWVP-MRSRTDP 1478
>09_02_0330 +
7321031-7321231,7321313-7321434,7321461-7322135,
7322218-7322287,7322469-7322768
Length = 455
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -1
Query: 262 RARTSHIYVSIDTR**SFRRFPYGNLVTTFTS--SK*SSLVNFPATPTAVKPPRVGPKTS 89
RA I +D R +F ++P ++V T S+ + L P + +++ PR GP S
Sbjct: 119 RAPNDEIMTLVDARK-TFIQWPKEDIVVKMTPRPSRPTELTP-PKSKLSIEAPR-GPALS 175
Query: 88 LNHSIGSSD 62
+ HS+G +D
Sbjct: 176 VPHSLGGAD 184
>05_07_0062 +
27423081-27423287,27423372-27423449,27423548-27423597,
27423714-27423767,27423965-27424017,27424101-27424173,
27424718-27424767,27424919-27424987,27425183-27425291,
27425658-27425725,27425982-27426082,27426260-27426412,
27426503-27426570,27426898-27426943,27427027-27427107
Length = 419
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 328 TQLGWFPASRGRTRPRPTMFSTCAIVARHSLVAEC 432
TQ GW P +RG R RP + + +R + C
Sbjct: 11 TQPGWAPTTRGGGRRRPLALALGRLSSRRPVRCRC 45
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 157 SSLVNFPATPTAVKPPRVGPKTSLNHSIGSSD 62
SS ++ P P A+ PP +T SIGS+D
Sbjct: 49 SSRIDLPGRPAALVPPSGKKQTKEKISIGSTD 80
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 238 HRYVRCARAPCNCIVRADREKGIPSPGVTHTQLGWF 345
HR C R P C+V +E P+P + W+
Sbjct: 255 HRERSCPRLPATCLVSMPKEYKPPAPWPERKEKVWY 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,812,849
Number of Sequences: 37544
Number of extensions: 372318
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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