Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F07
         (580 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131772-1|AAI31773.1|  983|Homo sapiens PHC3 protein protein.         32   1.7  
AJ320486-1|CAC86587.2|  983|Homo sapiens homolog of polyhomeotic...    32   1.7  
AF444193-1|AAM51781.1|  983|Homo sapiens polyhomeotic 3 protein ...    32   1.7  
AF380154-1|AAM46139.1|  964|Homo sapiens early development regul...    32   1.7  
EF560717-1|ABQ59027.1|  983|Homo sapiens PHC3 protein protein.         30   5.1  
X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.                   30   6.8  
D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator...    30   6.8  
BC040029-1|AAH40029.1|  298|Homo sapiens SMARCA2 protein protein.      30   6.8  
AL359076-5|CAI12969.1|  559|Homo sapiens SWI/SNF related, matrix...    30   6.8  
AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix...    30   6.8  
AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix...    30   6.8  
AL359076-2|CAI12966.1|  155|Homo sapiens SWI/SNF related, matrix...    30   6.8  
AL359076-1|CAI12965.1|   66|Homo sapiens SWI/SNF related, matrix...    30   6.8  
AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix...    30   6.8  
AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix...    30   6.8  

>BC131772-1|AAI31773.1|  983|Homo sapiens PHC3 protein protein.
          Length = 983

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -3

Query: 404 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 225
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 224 TLMILPQVPLRKP 186
           +L+   Q+PL  P
Sbjct: 304 SLIKHQQIPLHSP 316


>AJ320486-1|CAC86587.2|  983|Homo sapiens homolog of polyhomeotic 3
           protein.
          Length = 983

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -3

Query: 404 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 225
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 224 TLMILPQVPLRKP 186
           +L+   Q+PL  P
Sbjct: 304 SLIKHQQIPLHSP 316


>AF444193-1|AAM51781.1|  983|Homo sapiens polyhomeotic 3 protein
           protein.
          Length = 983

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -3

Query: 404 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 225
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 224 TLMILPQVPLRKP 186
           +L+   Q+PL  P
Sbjct: 304 SLIKHQQIPLHSP 316


>AF380154-1|AAM46139.1|  964|Homo sapiens early development
           regulator 3 protein.
          Length = 964

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -3

Query: 404 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 225
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 225 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 284

Query: 224 TLMILPQVPLRKP 186
           +L+   Q+PL  P
Sbjct: 285 SLIKHQQIPLHSP 297


>EF560717-1|ABQ59027.1|  983|Homo sapiens PHC3 protein protein.
          Length = 983

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -3

Query: 404 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 225
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 224 TLMILPQVPLRKP 186
           +L+   ++PL  P
Sbjct: 304 SLIKHQRIPLHSP 316


>X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.
          Length = 1586

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator
           hSNF2a protein.
          Length = 1572

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>BC040029-1|AAH40029.1|  298|Homo sapiens SMARCA2 protein protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL359076-5|CAI12969.1|  559|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1572

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1590

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL359076-2|CAI12966.1|  155|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 155

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL359076-1|CAI12965.1|   66|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 66

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1572

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


>AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1590

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 PSPGVTHTQLGWFPASRGRTRPRPTMFST 393
           PSPG  H+ +G  P     + P PTM ST
Sbjct: 35  PSPGSVHSMMGPSPGPPSVSHPMPTMGST 63


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,033,005
Number of Sequences: 237096
Number of extensions: 1888150
Number of successful extensions: 4020
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4020
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)