Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_F04
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.2  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   3.8  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   3.8  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.9  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   8.9  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   8.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   8.9  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 124 IDALYFKGNWRVLFPYENTESSPFYNTKGNQIGNV 228
           +D+L+F  N  V      TE SPF ++ G QI  +
Sbjct: 174 VDSLFFLNNDSVAISGNFTEISPFSSSNGPQIAKL 208


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 529 FDSGRAKFSGISEYQIYVSNLIQKAHIEVTEE 624
           FDS +A    + E +I   NLI K  +E TEE
Sbjct: 99  FDSLQAYNDYLEEVEILTFNLIYKIDVEETEE 130


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 40  NDFVRSATHEAIDE--IVTPSELDGVLLVLIDALYFKG 147
           +D  ++A  E I+E  +  P E D V+L   DA++ KG
Sbjct: 164 SDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKG 201


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
 Frame = +1

Query: 190 PFY-NTKGNQIGNVNLMYVTGTFNMTSVEQIGARVLELPYGDDNRYSM--LLFLPYTSTT 360
           PF+ +T  N   N    +V    N  S  QIG +  ELP+ D N   +    F    ++ 
Sbjct: 559 PFHISTLKNASKNDEGNFVYLRLNFVSPGQIGGKKDELPFEDPNAQFIRSFTFRSSNNSR 618

Query: 361 VSSVIDNLKRVPLSSIFTLFAKRTADEVIVQIPRFKIVSDINNLKELLTDMGLKTMFDSG 540
           +S V  +++ +  ++      ++   +VI Q    K++   N     + D+ ++   D  
Sbjct: 619 MSQVFKDIQDMKKAATKRETERKEFADVIEQ---DKLIEIKNKRPAHINDVYVRPAIDGK 675

Query: 541 RAK-FSGISEYQI-YVSNLIQKAHIEV 615
           R   F  I +  I Y S L   +HI++
Sbjct: 676 RLPGFIEIHQNGIRYQSPLRSDSHIDL 702


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 78  INSFVSCRSNEIVYCSRG 25
           +NS VSC+S  I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +1

Query: 397 LSSIFTLFAKRTADEVIVQIPRFKIVSDINNLKELLTDMGLKTMFDSGRAKFSGISEYQI 576
           L+SI  L  KR   E +       + SDI    +      LKT++ S    FSG S+ + 
Sbjct: 405 LNSIKHLPLKRATIEPLSDQALSTLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRA 464

Query: 577 YVSNLIQKA 603
              N+ + A
Sbjct: 465 TGKNIHESA 473


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 78  INSFVSCRSNEIVYCSRG 25
           +NS VSC+S  I+ C +G
Sbjct: 166 VNSDVSCKSQHILDCGKG 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,659
Number of Sequences: 5004
Number of extensions: 50593
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)