Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E24
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    30   0.27 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.63 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   1.5  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   7.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.8  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 113 PEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 241
           P K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 87  PYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 435 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 542
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 110 APEKGLSLFQDVDQVNVDDEYYKIGKDYDVEANIDN 217
           +P+      Q+V Q+N +DEY +   + D EA IDN
Sbjct: 46  SPDLNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 272 DNRFCTISRILQQLSYWCSYRCW 204
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 200 EANIDNYTNKKAVEEFLKLYRIGYLPK 280
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 407 NEGQFL-YAYYIAVIQRNDTHG 469
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,843
Number of Sequences: 5004
Number of extensions: 45708
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)