Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E22
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    30   0.22 
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   2.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.7  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   6.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.2  
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.2  

>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
 Frame = +2

Query: 158 LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV---------CT 310
           L++  KRLSG + +A +   D         N+Y T+   E +  I+ ++         C 
Sbjct: 34  LLSMDKRLSGLEASAGILRDDVTNYNRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQ 93

Query: 311 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 424
             N +V + +  V   +K + +D +  +G P+ Q+ SK
Sbjct: 94  NLNKSVSQNLKSVMDILKSLAEDYTSLEGSPL-QFASK 130


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 167 WKKR--LSGADPNADVTDFDRRITAGPDGN 250
           WK+   ++  +PNA +T F+R   +  DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 164  TWKKRLSGADPNADV 208
            TW+KRL G   N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 70  IASEDTRENANRRQAFPIGLCAAERL 147
           I + DT   A RRQ F   L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  SFRKTYLIASPAKTHEKTP 100
           +FRKTYL AS A  H   P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 26/109 (23%), Positives = 48/109 (44%)
 Frame = -1

Query: 493 MSQRVASIHTVDHGNIASFSHHILAYVLRDRLTFVPRVVFCHSLDLILYQNYLFVDRCVL 314
           M +R A++H    GN+A      L Y       F+P   F   + + L++    VDR   
Sbjct: 1   MERRKATVHV---GNLAPSVTESLLYN-----AFIP---FGEIISVALHRKEKAVDR--- 46

Query: 313 GGAYVFINVTDVFFSDDCEVEVSIRPSCDAAIKVSHISVRISSGQTFLP 167
             +Y F+   +   + +    ++    CD  I+VS  +  +S+ +T +P
Sbjct: 47  --SYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPANFALSAEETAVP 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,670
Number of Sequences: 5004
Number of extensions: 38476
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)