Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_E22
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0039 + 447573-448911,451247-451296,451322-451423 30 1.2
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 29 2.7
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 29 2.7
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 29 2.7
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440... 29 2.7
10_01_0037 + 434995-436299 28 3.5
06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890 27 6.2
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 27 6.2
04_04_0144 - 23095172-23095830,23095915-23097265 27 8.2
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487... 27 8.2
02_04_0217 + 20992238-20992397,20992488-20992792,20992910-209930... 27 8.2
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 139 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 32
RL +L R D++ L WRC +LP A H R
Sbjct: 259 RLLPARLGRRCTDFQLLAATLWRCRTAALPYAPHRR 294
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 256
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELW 286
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 256
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATTFDFTTKGILNVAVEGELW 286
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 350 EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 484
E+ KG+TK + +G+P PQ+ S+D M T IY M P
Sbjct: 16 EFMQKGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57
>01_03_0269 +
14442886-14442978,14443306-14443377,14443551-14444045,
14444134-14444253
Length = 259
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 140 NAYPKPLITWKKRLSGADPNADVTDF 217
NA+ + L+ W R+ GA+ NA DF
Sbjct: 123 NAHRQELVNWVNRVGGANSNATAFDF 148
>10_01_0037 + 434995-436299
Length = 434
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 139 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 32
RL L R D++ L WRC +LP A H R
Sbjct: 258 RLLPAPLGRRCTDFQLLPAALWRCRTAALPYAPHRR 293
>06_03_0987 -
26589277-26589420,26589620-26589774,26589845-26589890
Length = 114
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 64 EVSLPEADHPRAGNTGWGF 8
EV LP + PR G+ WGF
Sbjct: 24 EVQLPRGNDPRGGSYPWGF 42
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 362 KGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 484
KG+TK + +G+P PQ+ S+D M T IY M P
Sbjct: 20 KGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 14 PAGVASSRVISFRKTYLIASPAKTHEKTPI 103
PAG SSRV +R ++A P + +K +
Sbjct: 518 PAGAPSSRVAGYRAPEVVADPWRLSQKADV 547
>03_06_0042 +
31247084-31247641,31248396-31248482,31248684-31248779,
31248897-31248998,31249455-31249541,31249692-31249759,
31249879-31249963
Length = 360
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 23 VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL-DCVQPNAY 148
V SSR +R L+AS ++ P EG+ + + D P A+
Sbjct: 57 VISSRGFPYRSLRLLASERSAGKRLPFEGQEYTVQDLAAPGAF 99
>02_04_0217 +
20992238-20992397,20992488-20992792,20992910-20993038,
20993476-20993631
Length = 249
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 48 SGRLTSSHRQRRHTRKR-QSKAGLSNWTVC 134
S LTSS RR RKR S +NW +C
Sbjct: 134 SSNLTSSSSNRRSHRKRGHSSMESNNWVLC 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,344,871
Number of Sequences: 37544
Number of extensions: 268414
Number of successful extensions: 749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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