Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E21
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    93   2e-20
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    39   3e-04
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   0.86 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   2.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   4.6  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   6.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.1  

>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 44/91 (48%), Positives = 58/91 (63%)
 Frame = +1

Query: 130 LFHQEFVRYGSMKQVPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIW 309
           +F   F R+ +    PKT+ FWAPA KW LV++G+GD  R  E LSI Q A+L ATG IW
Sbjct: 1   MFRAGFKRFWNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIW 60

Query: 310 SRYSLVIIPKNYSLFAVNVFVANTSLYPISR 402
           +R+SL++ PKNY    VN F+A      +SR
Sbjct: 61  TRWSLIVRPKNYFNATVNFFLAIVGAVQVSR 91


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 190 FWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLFAVNVF 369
           FW P   +G+ IA + DL +    +S   + +L     ++ RY+ ++ P+NY L   + F
Sbjct: 37  FWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRYAWMVSPRNYLLLGCHAF 96


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 295 TGLIWSRYSLVIIPKNYSLFAVNVFVAN 378
           TG++WS Y++      Y+ FA + F A+
Sbjct: 657 TGILWSNYAIYDPKTAYNTFAASTFTAD 684


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 78  YEGVGRVFWVYY 43
           YEGV   FWVYY
Sbjct: 299 YEGVPHCFWVYY 310


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 250  PVESLSIPQSASLAATG---LIWSRYSLVIIPKNYSL 351
            P  S+++ +  SL ++G   ++W   S++  PKNYSL
Sbjct: 1252 PRSSMTV-KPLSLCSSGYESIVWDLTSILFDPKNYSL 1287


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 118 RLTNLFHQEFVRYGSMKQVPKTIFF--WAPAFKWGLVIAGLGDLNRPVESLSIPQS 279
           R  N+F+ E +  G    +    +    AP F      A  G+L RP +S S+P S
Sbjct: 276 RTRNIFNPESMSLGLKPPILNRSYSASMAPGFSMNTFTA-TGNLGRPTKSPSVPTS 330


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 108  GLYRFSTFSNYEGVGRVFWVYYFYVNKNLHDQSTSL 1
            GL+ F  +S  +    +   YYF+ NKN  ++S ++
Sbjct: 1063 GLHDFGVYSLKDEYYDLVDPYYFHYNKNEREESDTI 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,811
Number of Sequences: 5004
Number of extensions: 36007
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)