Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_E21
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 103 4e-23
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 101 3e-22
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 86 9e-18
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903... 58 2e-09
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304... 44 5e-05
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 27 5.8
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 27 7.7
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 27 7.7
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 103 bits (248), Expect = 4e-23
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +1
Query: 154 YGSMKQVPKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVII 333
YG +K TI FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI
Sbjct: 42 YG-IKTGHHTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVIT 100
Query: 334 PKNYSLFAVNVFVANTSLYPISRAFR 411
PKN++LF+VNV +A T LY +SR R
Sbjct: 101 PKNWNLFSVNVAMAGTGLYQLSRKIR 126
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 101 bits (241), Expect = 3e-22
Identities = 42/76 (55%), Positives = 56/76 (73%)
Frame = +1
Query: 184 IFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLFAVN 363
+ FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI PKN++LF+VN
Sbjct: 20 VHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLFSVN 79
Query: 364 VFVANTSLYPISRAFR 411
V +A T LY +SR R
Sbjct: 80 VAMAGTGLYQLSRKIR 95
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 86.2 bits (204), Expect = 9e-18
Identities = 37/79 (46%), Positives = 53/79 (67%)
Frame = +1
Query: 175 PKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLF 354
PKTI FWAP FKWG+ IA + D +P E +S PQ +A +G+IW+R+ +VI P N++L
Sbjct: 79 PKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARWGMVITPINWNLS 138
Query: 355 AVNVFVANTSLYPISRAFR 411
+VN +A T + +SR R
Sbjct: 139 SVNAAMAVTGVCQLSRKIR 157
>09_03_0104 -
12389907-12389943,12390086-12390203,12390339-12390393,
12391607-12391702
Length = 101
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +1
Query: 175 PKTIFFWAPAFKWGLVIAGLGDLNRPVESLSIPQSASLAATGLIWSRYSLVIIPKNYSLF 354
PKT FW P WG V+AGL D+N+P E +S +A L + R++ ++ P+NY L
Sbjct: 15 PKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL------FMRFAWMVQPRNYLLL 68
Query: 355 AVNVFVANTSLYPISR 402
A + + LY +SR
Sbjct: 69 ACHASNESVQLYQMSR 84
>08_02_0653 -
19729325-19729378,19730137-19730174,19730391-19730445,
19731401-19731496
Length = 80
Score = 44.0 bits (99), Expect = 5e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 175 PKTIFFWAPAFKWGLVIAGLGDLNRPVESLS 267
P+T FW P WG V+AGL D+N+P E +S
Sbjct: 15 PRTTHFWGPVANWGFVLAGLVDMNKPPEMIS 45
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 239 SPKPAITNPHLKAGAQKNIVFGTCF 165
SP PA NP + GAQ+N+ G +
Sbjct: 244 SPYPASVNPVVSGGAQQNVQAGPVY 268
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 142 EFVRYGSMKQVPK-TIFFWAPAFKWGLVIAGLGDLNRP 252
EFV G K T+ FWAP F++ + G P
Sbjct: 93 EFVNAGFSPVFMKLTVLFWAPTFRYDMFTGGPSQQRSP 130
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 256 ESLSIPQSASLAATGLIWSRYSLVI-IP-KNYS 348
ES+SIP A+ GL W SLV+ +P KN+S
Sbjct: 105 ESMSIPPYANQTFFGLEWITMSLVVPLPTKNFS 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,806,598
Number of Sequences: 37544
Number of extensions: 215554
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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