Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E18
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   2.2  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    24   5.2  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    23   6.9  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    23   9.1  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 1   SSRGQDRRPVDHQFERPSGTTCRLRRTMQHRDSQRAPP 114
           +SR   RRP D ++ RP G   R  R    R      P
Sbjct: 245 NSRSDYRRPHDDEYRRPRGDEYRPGRDEYRRSRDDGRP 282


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 61  LSHWVVRIDGPLADDLVPL 5
           L HW +RI G   DD++ +
Sbjct: 152 LDHWKLRIHGDAMDDMLAI 170


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 155 ALSIGKLRYHYLNQGGALCESRCCIVR 75
           ++  G +R  YLN+    C   C I+R
Sbjct: 120 SIRTGDIRRLYLNRSDKFCGESCLILR 146


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 95  THKGHHPDLDSDTVAYLL 148
           TH+G HPD     +A++L
Sbjct: 157 THRGTHPDYPFKPLAFVL 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,031,497
Number of Sequences: 5004
Number of extensions: 16116
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)