Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E18
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591     27   3.3  
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309...    26   4.4  
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305...    26   4.4  
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301...    26   4.4  
06_01_0352 + 2541022-2542069,2542280-2542335                           26   4.4  
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    26   5.8  
01_06_1778 - 39820552-39821991                                         26   5.8  
11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583...    25   7.7  

>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
          Length = 573

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 140 KLRYHYLNQGGALCESRCCIVRRSLQVVPLG 48
           K+  HYL   G  CE  CC V+R L+ + LG
Sbjct: 94  KIWRHYLI--GNRCEELCCEVQRDLEHLNLG 122


>07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,
            3096897-3097109,3097975-3098151,3098270-3100091,
            3100107-3100927,3101070-3101390
          Length = 1331

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 113  PDLDSDTVAYLLTAPNDITGEVXFRASIIXSFVIFCV 223
            P  D   + Y+   PN    +  +RAS++ SF ++C+
Sbjct: 1163 PPCDKADIQYMRVLPN-CGDDCIWRASLVVSFGVWCI 1198


>07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,
            3051653-3051865,3052731-3052907,3053026-3054847,
            3054863-3055683,3055826-3056146
          Length = 1331

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 113  PDLDSDTVAYLLTAPNDITGEVXFRASIIXSFVIFCV 223
            P  D   + Y+   PN    +  +RAS++ SF ++C+
Sbjct: 1163 PPCDKADIQYMRVLPN-CGDDCIWRASLVVSFGVWCI 1198


>07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,
            3019216-3019392,3019511-3021332,3021348-3022168,
            3022311-3022631
          Length = 1247

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 113  PDLDSDTVAYLLTAPNDITGEVXFRASIIXSFVIFCV 223
            P  D   + Y+   PN    +  +RAS++ SF ++C+
Sbjct: 1079 PPCDKADIQYMRVLPN-CGDDCIWRASLVVSFGVWCI 1114


>06_01_0352 + 2541022-2542069,2542280-2542335
          Length = 367

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 152 LSIGKLRYHYLNQGGALCESRCCIVRRSLQVVPLGR 45
           + + K  YH + +    C+ R  +VRR +Q+ P  +
Sbjct: 234 IPLSKEDYHIIRRYLVECDGRLLLVRRRMQIRPFAK 269


>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 104 GHHPDLDSDTVAYLLTAPNDITGEVXFRASIIXSFVIFCV 223
           G   DL+     YL+T P+DI+G    +       V++ V
Sbjct: 171 GRQADLNQIGSPYLITFPSDISGSTAAKCLDFSLVVVYLV 210


>01_06_1778 - 39820552-39821991
          Length = 479

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 44  NDPVGQLADCGEQCNTVTHKGHHPDLD 124
           ++P G   + GE CN +     HP +D
Sbjct: 357 HNPAGTWGNDGEPCNAIVPSAGHPYID 383


>11_05_0075 +
           18856659-18856878,18856890-18857107,18858253-18858319,
           18858706-18859397
          Length = 398

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 104 GHHPDLDSDTVAYLLTAPNDITGE 175
           G +PD D+D  A+ L    D+ GE
Sbjct: 54  GENPDWDADVFAFELPDDEDVRGE 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,188,337
Number of Sequences: 37544
Number of extensions: 121194
Number of successful extensions: 305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)