Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E18
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   1.8  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   3.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.1  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   9.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = +2

Query: 83  CNT-VTHKGHHPD 118
           C+T + H GHHPD
Sbjct: 274 CHTGLGHYGHHPD 286


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 128 HYLNQGGALCESRCCIVR 75
           H L + G  CE   CI R
Sbjct: 40  HSLGKAGGHCEKGVCICR 57


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  CGEQCNTVTHKGHHPDLDSDTVAYLLTAP 157
           CG   + VT+  ++  L S  + Y+ TAP
Sbjct: 252 CGMALSPVTNNLYYSPLASHGLYYVNTAP 280


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = -1

Query: 261 LHSVIFTGGDSIPTQKMTKLXMMEALNXTSPVISXGAVNR*ATVSLSKSGWC 106
           +H+V++  G++  TQ++  +     +   SP+   G     AT   ++   C
Sbjct: 362 MHNVVYRPGENPVTQRLPAVLSRIGIILASPLKREGGPPTGATTGPNEIVTC 413


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 122 LNQGGALCESRCCIVRRS 69
           L + G  CE   CI R++
Sbjct: 67  LGKAGGHCEKGVCICRKT 84


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 29  WTINSNDPVG 58
           W  N+N PVG
Sbjct: 88  WLANANSPVG 97


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 83  CNTVTHKGHHPDL 121
           CNT+ H  H P++
Sbjct: 467 CNTLHHWHHCPEI 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,092
Number of Sequences: 438
Number of extensions: 1167
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)