Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E17
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.7  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   4.0  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   5.2  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   6.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   6.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   9.1  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.1  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    24   9.1  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 165 RITRITLHAHYSISREGTQVL*GTLLFYFKTITFNKTLL-VTSFI 34
           R+      A+ S+SRE   +L  TL  Y K I+ ++ LL +TS +
Sbjct: 344 RVVDYDFGAYESVSREFYTILVNTLHDYIKVISIDEALLDITSSV 388


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 319 KTLNIDHLLR*RYPPAHTRDPPPMAAQDMHRFPMAGSYSRRQSDTV-TLHALSHYTHHTA 143
           + +N    +  R+ P H    P     +M R P A S S+ ++ T   +  LS  T  + 
Sbjct: 350 RPINPSSFVSDRHSPLHPYSVPENGKPNMGRIPSAPSLSKGRAMTADNMDMLSLTTRRSR 409

Query: 142 RTL 134
           R+L
Sbjct: 410 RSL 412


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 127 ITRRYTSSVRDPSFLF*NHNF*QDSSGHQLYS 32
           ++ +    V  P+FL   +NF QD   +QLYS
Sbjct: 352 MSTKIDKQVSYPAFLRMRYNFNQDDVDYQLYS 383


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 262 DPPPMAAQDMHRFPMAGSYSRRQSDTVTLHALSH 161
           D PP    D+ +    G Y  ++SDT+ +   SH
Sbjct: 181 DNPPSPKADISKDEYFGKYLPKKSDTLDMDLESH 214


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 259 PPPMAAQDMHRFPMAGSYSRRQSDTVTLHALSHYT 155
           PPP+    M + P   SYS   S + T  + ++YT
Sbjct: 140 PPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYT 174


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 308 Y*SFIEMTLPSRTHSGSAP 252
           Y S IE +  S THSG+AP
Sbjct: 142 YISMIESSRASSTHSGTAP 160


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -1

Query: 277 PAHTRDPPPMAAQDM-HRFPMAGSYSRRQSDTVTLHALSHYTHHTARTLQHITRRYTSSV 101
           P      P MA+ D  HR P + + +   +D   L   S   H T      +    TS +
Sbjct: 666 PRRVLSLPHMASADEDHRIPASDNQNNNNNDANALAENSESQHSTQIERYIVIEDLTSGM 725

Query: 100 RDPSFL 83
           + P  L
Sbjct: 726 KRPCVL 731


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 136 LQHITRRYTSSVRDPSFLF*NHNF*QDSSGHQLYSDRKRDDS 11
           LQHIT+  T       FL  ++N  ++ S  ++    KR++S
Sbjct: 212 LQHITQGTTDDNNVSKFLIPSYNDAKELSEEEMGRSHKREES 253


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 137 CACSVMRVMRKCMECHCITLAAAVRTC 217
           CA     +M  C+EC   T +AA + C
Sbjct: 41  CAICRNHIMDLCIECQANTDSAAAQEC 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,090
Number of Sequences: 5004
Number of extensions: 36110
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)