Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E17
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0148 - 22729469-22730116,22730215-22730589                       32   0.24 
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637...    30   0.73 
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696...    28   2.9  
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22...    28   2.9  
08_01_0434 + 3809681-3810016,3810039-3811100                           27   5.1  
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    27   5.1  
01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675     27   5.1  
12_01_0018 + 132654-133304,133726-134265,134357-134436,134673-13...    27   9.0  
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13...    27   9.0  

>05_05_0148 - 22729469-22730116,22730215-22730589
          Length = 340

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 263 GSAPDGGSRHASIPNGRFLQPPPE*YSDTPCTFALHASHCTHTTAYH 123
           G   D GS   S+PN     PPP  YS  P +F +H S  +H+  +H
Sbjct: 24  GFVDDKGSMF-SLPNVAGSAPPPSYYSSLP-SFYIHRSTSSHSLLHH 68


>04_03_1033 +
           21861826-21863046,21863153-21863380,21863474-21863704,
           21863808-21864070,21864189-21864660
          Length = 804

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 313 LNIDHLLR*RYPPAHTRDPPPMAAQDMHRFPM 218
           +NIDHLL+    P   + PPP AA    R+ +
Sbjct: 64  INIDHLLKHLGSPKKKKTPPPAAAASASRYSL 95


>08_02_1204 -
           25267546-25268219,25268319-25268452,25269567-25269661,
           25270289-25270304,25270635-25270684,25270960-25271331
          Length = 446

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 196 GGGCKNLPLGIDACLEPPSGADPECVREG 282
           GGG KN   G+ A   PP    P C  EG
Sbjct: 80  GGGGKNKGKGVAAAAPPPPPPPPRCQVEG 108


>08_01_0030 +
           222748-222829,223224-223448,223800-224204,224773-225389
          Length = 442

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 ITLAAAVRTCHWESMHVLSRHRGRIP 265
           + +AA + TC +   H + R RGRIP
Sbjct: 158 LAMAAVLATCFFVRRHQIRRDRGRIP 183


>08_01_0434 + 3809681-3810016,3810039-3811100
          Length = 465

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 280 PPAHTRDPPPMAAQDMHRFPMAGSYSRRQ 194
           PP HT  PPP+     +   +A S SRR+
Sbjct: 7   PPPHTAPPPPLLPAVGYLIDVAPSTSRRE 35


>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 280 PPAHTRDP-PPMAAQDMHR 227
           PP HT  P PP A +D+HR
Sbjct: 256 PPPHTAPPSPPPATEDVHR 274


>01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675
          Length = 273

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -1

Query: 280 PPAHTRDPPPMAAQDMHRFPMAGSYSRRQSDTVTLHALSHYTHHTARTLQHITRRYTSSV 101
           PP     PPP   Q    F    S +   S + +  +LS   H +A  +     R+  S+
Sbjct: 38  PPPPPPPPPPQPDQGRSAFAAYQSTAAMASSSSSSESLSRRYHSSASNVHRRMHRFLRSI 97

Query: 100 RD 95
            D
Sbjct: 98  YD 99


>12_01_0018 +
           132654-133304,133726-134265,134357-134436,134673-134949
          Length = 515

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 233 ASIPNGRFLQPPPE*YSDTPCTFALHAS 150
           AS+P+      PPE  SD  C   +HA+
Sbjct: 36  ASLPSNAAAPAPPEEPSDASCALEIHAA 63


>11_01_0019 +
           135610-136296,136736-137275,137367-137518,137683-137959
          Length = 551

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 203 PPPE*YSDTPCTFALHASHCTHTTAYH 123
           PPPE  SD  C  A+HA+        H
Sbjct: 58  PPPEEPSDASCALAVHAADLARAEQDH 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,946
Number of Sequences: 37544
Number of extensions: 278470
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)