Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_E14
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 30 0.22
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 28 1.2
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 28 1.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.0
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.0
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 2.0
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 2.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 2.7
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 2.7
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 26 4.7
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 6.2
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 6.2
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 6.2
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 8.3
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 8.3
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 185 DIGVENTEENRRKYRQLLFSSDPALSENISGVILFHETLYQKTDDGTPLVSLLEKRGIIP 364
D G+E +E NRRK +FS S ++S H TL D + V++ + G +P
Sbjct: 494 DSGIEASESNRRK--SDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551
Query: 365 GIK 373
++
Sbjct: 552 PLR 554
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +2
Query: 71 PTPELQEELRKIAQAIVAPGKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSD 250
P PE ++E K+A++ P K +A ES K +++ + + N YR L +
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGLHDVNL 534
Query: 251 PALSENISGV 280
PA S N S V
Sbjct: 535 PA-SGNASSV 543
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +3
Query: 285 SSTKPCTRRQMMELPLYLSWRNAASSPVSRSTRVLSPCSDLKTSAPLKVSMTWPSVALST 464
+ T + L YLS R +A+ PV R+ L + ++ SAP ++ + A S
Sbjct: 164 AQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSA-SQ 222
Query: 465 RRTAA 479
+++AA
Sbjct: 223 KKSAA 227
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 71 PTPELQEELRKIAQAIVAPGKGILAADESTGTMGKRLQ 184
PT E QEE+RK+ + I + G+ S T+ +R++
Sbjct: 603 PTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIE 640
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 266 NISGVILFHETLYQKTDDGTPLVSLLEKRGIIPGIKVDKGVVPLFGSEDECT-TQGLDDL 442
NI GV+ + ++ + + L +L EK G I GSE + T+ D+
Sbjct: 357 NIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSSITEKTRDI 407
Query: 443 AQRCAQYKKDGCHFAKW 493
A+ A + K+G +F+ W
Sbjct: 408 AKNVATWLKNGENFSSW 424
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 421 GALVFRSEQGDNTLVDLDTGDDAAFLQ 341
G + SE NTLV D DD+ FL+
Sbjct: 238 GETIDESEDSKNTLVTEDENDDSVFLE 264
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 2.7
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 309 RQMMELPLYLSWRNAASSPVSRSTRVLSPCSDLKTSAPLKVSMTWPSVALSTRRTAAT-- 482
RQ+ +LP A++PV +S + + + +T VS T SVA ST AA+
Sbjct: 185 RQLKQLP---DAEQPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPA 241
Query: 483 -LPSG 494
LP G
Sbjct: 242 VLPEG 246
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 467 KDGCHFAKWRCVLKIGRNTPSYQAILENANVFGSLRL 577
K CHF +C LK+ + + A+ N++ SL L
Sbjct: 148 KHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLEL 184
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 150 MSPLVQWASVSRTLESKTLRRIAVNTVNSCSVLTRHSLRT 269
+SP V + S R ++LR+I + +S T HS T
Sbjct: 524 VSPAVVFTSSPRIFSPQSLRKIGFDPTHSADASTTHSTAT 563
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 128 GKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPA 256
GKG ADE + +I + EEN K R L+ +PA
Sbjct: 18 GKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPA 60
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 341 LEKRGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 448
L+K+G++P V++ +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Frame = +3
Query: 327 PLYLS-WRNAASSPVSRSTRVLSPCSDLKT------SAPLKVSMT-WPSVA 455
P ++S W + A+ + S +VL+P S LK +AP+ + + WPS A
Sbjct: 355 PQFVSNWNHCATPTIPVSLQVLTPNSSLKVDPTTPLTAPIHATESFWPSAA 405
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 555 LAFSKMAWYDGVLRPIFNTQ 496
+ F+K+ WY L +FNT+
Sbjct: 33 ITFAKLRWYGKTLLEVFNTE 52
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 146 ADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPALSENISGVIL 286
AD+ T G + + + N EN+ R SSDPA +N +L
Sbjct: 529 ADKMTDMRGLCVNPLLLGNFVENKDLPRMASISSDPATLKNAIAFVL 575
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 8.3
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 167 MGKRLQDIGVENTEENRRKYRQLLFSSDPAL--SENISGVILFHETLYQKTDDGTPLVSL 340
M +L+++ + E+ R K R+ + DP S IS V L + + G PL +
Sbjct: 1 MNNQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALL--KMLRHVSQGMPLEVM 58
Query: 341 LEKRGIIPG---IKVDKGVVPLFGSE 409
+G + G I +D +P+ G+E
Sbjct: 59 GYVQGKVEGASLIILDSFALPVEGTE 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,212
Number of Sequences: 5004
Number of extensions: 61032
Number of successful extensions: 198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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