Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E13
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0445 - 3319451-3320035                                           28   3.1  
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689...    27   9.5  
05_04_0117 + 18136189-18137073,18137160-18137516                       27   9.5  
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949...    27   9.5  

>01_01_0445 - 3319451-3320035
          Length = 194

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 123 FFISQFD---KYDFIGTEPVL*CRRRDLCNPDRECE 221
           +F+++F      DF+G +P   C  R L +PDR+C+
Sbjct: 111 YFLAEFGVTRASDFLGADPRGACYARLLSSPDRKCD 146


>09_02_0285 +
           6894899-6895114,6896197-6896422,6896889-6896992,
           6897121-6897239,6897445-6897634
          Length = 284

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 55  VLVCNWVECVPYLYKRECIT*SI 123
           + +CN V CVPY   R C T S+
Sbjct: 184 IRICNLVGCVPYGRGRRCNTFSL 206


>05_04_0117 + 18136189-18137073,18137160-18137516
          Length = 413

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 73  PSYTQAHNYKFAWKHSTSCRIRHE 2
           P    +  YK +W H TS R  HE
Sbjct: 385 PKIRTSSRYKASWYHFTSARFSHE 408


>02_05_1152 +
           34494423-34494586,34494725-34494781,34494851-34494908,
           34494989-34495088,34495270-34495383,34495588-34495810,
           34496112-34496246,34496575-34496679,34496906-34497001,
           34497387-34497516,34497933-34497983,34498538-34498648,
           34499267-34499376,34499490-34499655,34499740-34499820,
           34499907-34499975,34500099-34500212,34500699-34500760,
           34500894-34500990,34501152-34501271
          Length = 720

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 157 IKSYLSNCEIKKYFT*CTLSYTNKAHTQPSYTQAHNYKFA 38
           ++ Y  + E   YF+  +L Y  K+  QP     HN++ A
Sbjct: 342 LRGYPDDFERFSYFSRASLDYIVKSGKQPDVLHVHNWETA 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,249,688
Number of Sequences: 37544
Number of extensions: 202602
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)