Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E11
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.64 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.0  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   7.9  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   7.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.9  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 375 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 482
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 212 DNRFCTISRILQQLSYWCSYRCW 144
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 113 YYKLERTIR*ANIDNYTNKKAVEEFLKLY 199
           Y+K+E+ ++ ANI +  N K   +F  L+
Sbjct: 218 YHKVEKLLKSANIRSSLNSKTFNDFRTLF 246


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 440 PQFFVDMDTLLKIYRTKMQDGILHDAKAINYGIVKEEE 553
           P  F  +D L  +YR+K +D   HD K+    ++ EE+
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED 152


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 461 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYAN 574
           D  + I R K   G + HD   +NY ++   E++ +  N
Sbjct: 83  DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTEN 121


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 347 NEGQFL-YAYYIAVIQRNDTHG 409
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,075
Number of Sequences: 5004
Number of extensions: 50067
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)