Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E10
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0074 + 17901185-17901258,17901758-17901845,17902195-179023...    28   5.8  
05_04_0113 + 18085705-18085833,18086442-18086885                       28   7.7  

>01_05_0074 +
           17901185-17901258,17901758-17901845,17902195-17902332,
           17902820-17903044,17903176-17903358,17903453-17903697,
           17905640-17905685,17905784-17905876
          Length = 363

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 372 QINVKLKNNDALKNLHIIQCHSS 304
           QI  +LK N A +N HI+ CH S
Sbjct: 113 QIVQELKINQATQNAHIVLCHQS 135


>05_04_0113 + 18085705-18085833,18086442-18086885
          Length = 190

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = +1

Query: 121 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 273
           E+    TS+R R    G LT+ ++       G  GAG ++P AG D    +  G   +  
Sbjct: 30  EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89

Query: 274 TNRQKLGAATAGVALD 321
           ++   + AA+AG+  D
Sbjct: 90  SSLAAMVAASAGIQPD 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,515
Number of Sequences: 37544
Number of extensions: 271523
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)