Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_E09
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.51
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 27 2.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.6
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 4.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 4.8
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.51
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Frame = -3
Query: 353 STSMESALPSRPAAPIAFNSTPCTTNRKRRSP-GCTPTSDSQPSSSC--DAFISWSCRSG 183
S++ S+L S AA + S+ + S +PTS S SSS + S S S
Sbjct: 68 SSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSS 127
Query: 182 SCAPPPQFDSDVT*RGVTHGVTLLDGLLSATSMGPMECATRGSAPPESATS 30
S A S + +T S++ +T + P SATS
Sbjct: 128 SLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATS 178
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 439 LLFGLSAVFPYTGRLRHYYYHVCPHLTPYAYPLANA 546
+L G S V + +RH+ YH +LT Y A A
Sbjct: 150 VLHGPSEVHQFLSSMRHFTYHTNVNLTVQGYTSAEA 185
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 388 LLVGLAACDTVLILTSVLLFGLSAVFPYTGRLRHYY 495
+L+ A T ++ T+ L LSA++P +G Y+
Sbjct: 96 ILIAFAVIGTYVLFTTSALAELSAIYPVSGSFYTYF 131
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/93 (20%), Positives = 42/93 (45%)
Frame = -3
Query: 464 NTAERPNRSTEVRMSTVSHAARPTRRQLTEERICGRDSTSMESALPSRPAAPIAFNSTPC 285
+++ P ++ S+ S ++ PT T S+ + S ++ +F+S+P
Sbjct: 278 SSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPT 337
Query: 284 TTNRKRRSPGCTPTSDSQPSSSCDAFISWSCRS 186
+++ S +P+S S S++ + S S S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSS 370
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 4.8
Identities = 27/106 (25%), Positives = 36/106 (33%)
Frame = -3
Query: 470 YGNTAERPNRSTEVRMSTVSHAARPTRRQLTEERICGRDSTSMESALPSRPAAPIAFNST 291
Y N ERP R M + T +T ST++ S + N T
Sbjct: 274 YFNIPERPRRERLHAMRVRDIRSHSTNTTITS---VDSASTALNSYSTPNSVSRKLTNLT 330
Query: 290 PCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSCRSGSCAPPPQFDS 153
P RS +P S PS+S + S S P P+ S
Sbjct: 331 PAARRLVARSYLRSPLHGSSPSASRHTALRTSIPKFSWTPTPRVKS 376
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 347 SMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSCDAFIS 201
S +L S ++ S ++N++ SPG +P++DSQ ++ IS
Sbjct: 86 SSNPSLISSGSSQTGSPSQSLSSNKEPSSPGISPSNDSQSQNTNHTSIS 134
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 6.3
Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Frame = -3
Query: 476 PVYGNTAERPNRSTEVRM-STVSH--AARPTRRQLTEERICGRDSTSMESALPSRPAAPI 306
P + R ++ST+ + VS + P+ +R DS S S LPSR PI
Sbjct: 400 PPLATPSSRNSKSTQSAVPENVSRFDSNEPSATSPILKRSSPTDSISQNSGLPSRLTEPI 459
Query: 305 AFNSTPCTTNRKRRS--PGCTPTSDS------QPSSSCDAFISWSCRSGSCAPP 168
+ ST K + PG S QPSS+ + S PP
Sbjct: 460 SSPSTSSIDVDKEGTSFPGLPYHSSKGNLYAPQPSSNVPTKFTGGASESSSVPP 513
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.3
Identities = 20/77 (25%), Positives = 27/77 (35%)
Frame = -3
Query: 449 PNRSTEVRMSTVSHAARPTRRQLTEERICGRDSTSMESALPSRPAAPIAFNSTPCTTNRK 270
P T +T + A+ P + T + S S LPS + S P T
Sbjct: 69 PVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSS 128
Query: 269 RRSPGCTPTSDSQPSSS 219
S TPT +SS
Sbjct: 129 SLSTPITPTVPPTSTSS 145
Score = 25.0 bits (52), Expect = 8.3
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 1/106 (0%)
Frame = -3
Query: 482 SRPVYGNTAERPNRSTEVRMSTVSHAARPTRRQ-LTEERICGRDSTSMESALPSRPAAPI 306
S P+ ST + + S ++ T L STS+ + S + PI
Sbjct: 188 STPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPI 247
Query: 305 AFNSTPCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSCRSGSCAPP 168
P +T+ T TS + +SS S SC + + PP
Sbjct: 248 TPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPP 293
Score = 25.0 bits (52), Expect = 8.3
Identities = 27/113 (23%), Positives = 37/113 (32%)
Frame = -3
Query: 353 STSMESALPSRPAAPIAFNSTPCTTNRKRRSPGCTPTSDSQPSSSCDAFISWSCRSGSCA 174
+TS P+ P +T+ P TS + SSS S SC + +
Sbjct: 340 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSI 399
Query: 173 PPPQFDSDVT*RGVTHGVTLLDGLLSATSMGPMECATRGSAPPESATSVFTSL 15
PP T T + S+T + C T S P S T L
Sbjct: 400 PP-------TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPL 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,189
Number of Sequences: 5004
Number of extensions: 31694
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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