Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E08
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   1.2  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   2.9  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   8.8  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   8.8  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 229 QRPLHGR*WGISYYQIRWRRTEISKVKTQES 321
           Q P H + +G   Y + W  TEI ++  Q++
Sbjct: 297 QSPTHEKNYGHDEYSLPWNLTEIKRIDIQQA 327


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 410 SRLIFVMTNVMFIPSIFHKY 351
           S L++ M  ++FIP +F+KY
Sbjct: 77  SALVYFMCMIIFIPVLFYKY 96


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 242 TDGNGGYPIIKSGGVGQKFLKLKLKSQRNHGFNFTVSIYG 361
           T GNGGY ++K G    +     L S      +  V++YG
Sbjct: 45  TYGNGGYTVLKDGFQVSRTSDYILYSVEAEHIDKVVALYG 84


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 259 ISYYQIRWRRTEISKVKTQE 318
           I+YY + WR+  + K KT E
Sbjct: 53  IAYYNVVWRKITMKKHKTWE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,034
Number of Sequences: 5004
Number of extensions: 39563
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)