Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E08
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448...    32   0.24 
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   5.1  
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129...    27   6.7  
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138...    27   6.7  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    27   8.8  
02_05_1268 - 35345283-35345462,35345577-35345636,35345719-353460...    27   8.8  

>05_03_0248 +
           10942363-10942612,10942702-10943345,10944301-10944816,
           10945085-10945237,10945545-10945637
          Length = 551

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 164 TSDIEFPEPGQRSISYISAVYIKDHYTDGNGGYPIIKSGGVGQKF--LKLKLKSQRNHGF 337
           T D++  + G R +SY S  + KD  + G+GG+          K+  L L L+S    GF
Sbjct: 225 TYDLDAADLGSREVSYYSVTWEKDIGSGGDGGWVFHHKLRTAPKYPWLMLYLRSDATKGF 284

Query: 338 N 340
           +
Sbjct: 285 S 285


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 197 RSISYISAVYIKDHYTDGNGGYPIIKSGGVGQKFLKLKLKSQRNHGFNFTV 349
           RSI    A+ +   ++   G  P++ SGG+G+  L   +  + ++ F+ TV
Sbjct: 336 RSIGQYIAMSLNAEFSKKPGHAPVLPSGGIGKTTLAQYIYKEVHNYFDVTV 386


>12_01_0173 -
           1292164-1293036,1294063-1294098,1294195-1294334,
           1295592-1295748,1295862-1296035,1296146-1296396,
           1299446-1299590
          Length = 591

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 187 LREFYVTGPHDKREAVFVLVDFVDEEIAIG 98
           L++FYV G  D ++ V  L+D  DE    G
Sbjct: 114 LKDFYVNGGEDGKKVVGRLIDIWDERKVFG 143


>11_01_0172 -
           1383568-1384440,1385336-1385401,1385470-1385505,
           1385604-1385743,1386978-1387134,1387245-1387418,
           1387540-1387790,1390296-1390446
          Length = 615

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 187 LREFYVTGPHDKREAVFVLVDFVDEEIAIG 98
           L++FYV G  D ++ V  L+D  DE    G
Sbjct: 116 LKDFYVNGGEDGKKVVGRLIDIWDERKVFG 145


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 13  NASTYSDQFILLFGGGFVPEPRPVPGAAVLWRSPRLQSQRVQIRL 147
           N   +++QF+ + G G V     VPG    ++  RL S + ++R+
Sbjct: 574 NLRVFNNQFVSIGGNGAVIATATVPGPNETFQIIRLDSDKSRMRI 618


>02_05_1268 -
           35345283-35345462,35345577-35345636,35345719-35346042,
           35346266-35346349,35346784-35346872,35346959-35347073,
           35347534-35347660,35347743-35347882,35348010-35348071,
           35348769-35348838,35348947-35349066,35349155-35349232,
           35349738-35349968,35350110-35350220
          Length = 596

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 1   RPNENASTYSDQFILLFGG 57
           R + +A+ Y+DQ++L+FGG
Sbjct: 278 RYDHSAAVYADQYLLIFGG 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,575,059
Number of Sequences: 37544
Number of extensions: 301647
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)