Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E08
         (513 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537759-1|CAD97828.1| 1763|Homo sapiens hypothetical protein pr...    30   5.5  
BX537708-1|CAD97819.1| 1605|Homo sapiens hypothetical protein pr...    30   5.5  
BC146782-1|AAI46783.1| 1814|Homo sapiens CDK5 regulatory subunit...    30   5.5  
BC004526-1|AAH04526.2|  429|Homo sapiens CDK5RAP2 protein protein.     30   5.5  
AL590642-1|CAH70769.1| 1893|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL391870-3|CAI40927.1| 1287|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL391870-1|CAI40925.1| 1893|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL353736-5|CAI40657.1|  903|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL353736-4|CAI40656.1|  400|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL353736-3|CAI40655.1| 1287|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL353736-1|CAI40653.1| 1893|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL138836-1|CAI16963.1| 1893|Homo sapiens CDK5 regulatory subunit...    30   5.5  
AL133161-1|CAB61487.1| 1287|Homo sapiens hypothetical protein pr...    30   5.5  
AK027636-1|BAB55253.1|  943|Homo sapiens protein ( Homo sapiens ...    30   5.5  
AK025867-1|BAB15263.1|  350|Homo sapiens protein ( Homo sapiens ...    30   5.5  
AK001729-1|BAA91865.1|  902|Homo sapiens protein ( Homo sapiens ...    30   5.5  
AF448860-1|AAP41926.1| 1893|Homo sapiens hypothetical protein pr...    30   5.5  
AB046853-1|BAB13459.2| 1852|Homo sapiens KIAA1633 protein protein.     30   5.5  

>BX537759-1|CAD97828.1| 1763|Homo sapiens hypothetical protein
            protein.
          Length = 1763

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1614 DSLSCDSGSSATSTPCVSRLVT 1635


>BX537708-1|CAD97819.1| 1605|Homo sapiens hypothetical protein
            protein.
          Length = 1605

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1463 DSLSCDSGSSATSTPCVSRLVT 1484


>BC146782-1|AAI46783.1| 1814|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1814

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1614 DSLSCDSGSSATSTPCVSRLVT 1635


>BC004526-1|AAH04526.2|  429|Homo sapiens CDK5RAP2 protein protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177 NSLSQDKGASRTSAPCTSKTIT 242
           +SLS D G+S TS PC S+ +T
Sbjct: 229 DSLSCDSGSSATSTPCVSRLVT 250


>AL590642-1|CAH70769.1| 1893|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1693 DSLSCDSGSSATSTPCVSRLVT 1714


>AL391870-3|CAI40927.1| 1287|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1087 DSLSCDSGSSATSTPCVSRLVT 1108


>AL391870-1|CAI40925.1| 1893|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1693 DSLSCDSGSSATSTPCVSRLVT 1714


>AL353736-5|CAI40657.1|  903|Homo sapiens CDK5 regulatory subunit
           associated protein 2 protein.
          Length = 903

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177 NSLSQDKGASRTSAPCTSKTIT 242
           +SLS D G+S TS PC S+ +T
Sbjct: 703 DSLSCDSGSSATSTPCVSRLVT 724


>AL353736-4|CAI40656.1|  400|Homo sapiens CDK5 regulatory subunit
           associated protein 2 protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177 NSLSQDKGASRTSAPCTSKTIT 242
           +SLS D G+S TS PC S+ +T
Sbjct: 200 DSLSCDSGSSATSTPCVSRLVT 221


>AL353736-3|CAI40655.1| 1287|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1087 DSLSCDSGSSATSTPCVSRLVT 1108


>AL353736-1|CAI40653.1| 1893|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1693 DSLSCDSGSSATSTPCVSRLVT 1714


>AL138836-1|CAI16963.1| 1893|Homo sapiens CDK5 regulatory subunit
            associated protein 2 protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1693 DSLSCDSGSSATSTPCVSRLVT 1714


>AL133161-1|CAB61487.1| 1287|Homo sapiens hypothetical protein
            protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1087 DSLSCDSGSSATSTPCVSRLVT 1108


>AK027636-1|BAB55253.1|  943|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14730 fis, clone NT2RP3001931, weakly similar to
           Rattus norvegicus clone C48 CDK5 activator-binding
           protein mRNA. ).
          Length = 943

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177 NSLSQDKGASRTSAPCTSKTIT 242
           +SLS D G+S TS PC S+ +T
Sbjct: 743 DSLSCDSGSSATSTPCVSRLVT 764


>AK025867-1|BAB15263.1|  350|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22214 fis, clone HRC01534. ).
          Length = 350

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177 NSLSQDKGASRTSAPCTSKTIT 242
           +SLS D G+S TS PC S+ +T
Sbjct: 150 DSLSCDSGSSATSTPCVSRLVT 171


>AK001729-1|BAA91865.1|  902|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10867 fis, clone NT2RP4001634. ).
          Length = 902

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177 NSLSQDKGASRTSAPCTSKTIT 242
           +SLS D G+S TS PC S+ +T
Sbjct: 702 DSLSCDSGSSATSTPCVSRLVT 723


>AF448860-1|AAP41926.1| 1893|Homo sapiens hypothetical protein
            protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1693 DSLSCDSGSSATSTPCVSRLVT 1714


>AB046853-1|BAB13459.2| 1852|Homo sapiens KIAA1633 protein protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 177  NSLSQDKGASRTSAPCTSKTIT 242
            +SLS D G+S TS PC S+ +T
Sbjct: 1652 DSLSCDSGSSATSTPCVSRLVT 1673


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,011,299
Number of Sequences: 237096
Number of extensions: 1602556
Number of successful extensions: 3613
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)