Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E08
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 312 SRVKGITGLISQSVFMEDTRYKHNISHNKY 401
           SR   I   +S      +  YK+N ++N Y
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNY 105


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 312 SRVKGITGLISQSVFMEDTRYKHNISHNKY 401
           SR   I   +S      +  YK+N ++N Y
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNY 105


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 312 SRVKGITGLISQSVFMEDTRYKHNISHNKY 401
           SR   I   +S      +  YK+N ++N Y
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNY 105


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 312 SRVKGITGLISQSVFMEDTRYKHNISHNKY 401
           SR   I   +S      +  YK+N ++N Y
Sbjct: 309 SREPKIISSLSNKTIHNNNNYKYNYNNNNY 338


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 225 TSKTITRTVMGDILLSNPVASDRNF*S*NSRVKGITGLISQSVFMED 365
           T++ ITR ++   L+S    S       N+++  I     + VFM+D
Sbjct: 69  TNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFMKD 115


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 225 TSKTITRTVMGDILLSNPVASDRNF*S*NSRVKGITGLISQSVFMED 365
           T++ ITR ++   L+S    S       N+++  I     + VFM+D
Sbjct: 52  TNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKVFMKD 98


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 312 SRVKGITGLISQSVFMEDTRYKHNISHNKY 401
           SR   I   +S      +  YK+N ++N Y
Sbjct: 76  SREPKIISSLSNRTIHNNNNYKYNYNNNNY 105


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 367 LGINITLVITNISRDSR-*LVKVLY 438
           LGI   L ++ IS DSR  L KV Y
Sbjct: 279 LGITTVLTLSTISLDSRTDLPKVRY 303


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 188 PGQRSISYISAVYIKDHYTDGNGGYPIIKSGGVGQKFLKLKLKS 319
           P  R    ++AV        G GG P++ +GG  + + + +L++
Sbjct: 555 PKPRMSGPVAAVAAAAVAAAGVGGVPVVGAGGGRRAYTEEELQA 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,118
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)