Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E06
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    33   0.038
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    29   0.81 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   4.3  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    26   4.3  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   5.7  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   10.0 

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 227  CHRKLWARRSAG--AERAYPSYHDHHTLVLADHPHTL 123
            CH++LW +++AG    +A  SY  HH L + D  H +
Sbjct: 1161 CHKELWYQKNAGFLGLKAILSYDSHHKLWIQDRLHDI 1197


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 612 LRTLNVHSARMRVQRVQEPPAACAYCV-RNVSYKIFD 505
           LRTLNV S R ++  VQ+ P   A  V  N++Y + D
Sbjct: 486 LRTLNVASLRNQISLVQQEPVLFATTVFENITYGLPD 522


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -3

Query: 137 HPHTLPSH--PYRHSRVNDCQPQIC 69
           HPHT P H  P+ H   N+  P  C
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPPPYC 194


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 173 SYHDHHTLVLADHPHTLPSHPYRHSRVND 87
           S+  ++T+++ D      +HPY H  V+D
Sbjct: 143 SWSQYNTIIVDDSKTKCAAHPYNHIAVSD 171


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 69  TYLWLTVVHAAMAVWM 116
           T++WLTVV+  +A W+
Sbjct: 172 TFVWLTVVYCPIACWI 187


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 238 RRSSVIGSCGHGGRPGRSAPIHRITIIIHW 149
           R S    SC H G P  S P   + I +H+
Sbjct: 177 RFSPASNSCCHSGAPVHSGPSMALRIFLHF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,526
Number of Sequences: 5004
Number of extensions: 57700
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)