Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_E06
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 31 0.84
06_01_0008 + 141405-142421 31 0.84
02_05_0686 - 30900748-30902167,30903442-30904742 30 1.5
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 29 2.6
01_01_0984 + 7779251-7779329,7779354-7780054 29 2.6
11_04_0325 + 16395124-16396794 29 3.4
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083... 29 3.4
07_01_0432 + 3290546-3291911,3291972-3291988 29 4.5
04_04_0176 - 23329589-23331043 29 4.5
03_06_0236 - 32545561-32546961 29 4.5
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 5.9
07_01_0951 - 8001093-8001344,8001475-8001990,8002057-8002209,800... 28 5.9
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 28 5.9
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 28 5.9
02_05_0584 - 30135768-30135790,30136104-30136866 28 5.9
01_03_0259 - 14312197-14312259,14312384-14312456,14312651-143127... 28 5.9
10_01_0066 + 848523-849269,849520-849741 28 7.8
05_04_0146 + 18393447-18394043 28 7.8
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 183 ALRPGR-PPCPQLPMTELLRDRRLWATVIC 269
AL P R PPC QLP+ ++ LW VIC
Sbjct: 37 ALGPPRTPPCYQLPLAKVNSSLPLWPPVIC 66
>06_01_0008 + 141405-142421
Length = 338
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 336 AYGSLS*APATGAPPRMGERRLYIS-PLPIGACRGG 232
A S S +P+ PPR+ ERR IS P P+ A GG
Sbjct: 265 APASASASPSPAPPPRLAERRFRISLPWPLRAAFGG 300
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -2
Query: 411 RGTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPL 256
RG PPAS P PPPRP Y + + +PPR + R+ PL
Sbjct: 167 RGRKPPASRRPPQPPPPRP---YRAERRQDAHESSAPSPPRSRKNRIDQEPL 215
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 408 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGER-RLYISPLPIGACRG 235
GT+PPA S RG +C + + + + + PPR GE+ +++ P+P+ G
Sbjct: 584 GTLPPALSASRGNNYIVDTLLHCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLSG 642
>01_01_0984 + 7779251-7779329,7779354-7780054
Length = 259
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 165 VIRWIGALRPGRPPCPQLPMTELLRDRRLWA 257
+ RW G L R P PQ + LRD +WA
Sbjct: 196 IARWHGLLLSARSPRPQGALLHRLRDVSIWA 226
>11_04_0325 + 16395124-16396794
Length = 556
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 271 VHITVAHRRLSRR--SSVIGSCGHGGRPGRSAPI 176
V + V+ RLSR SS SCGHGG RS P+
Sbjct: 13 VVVMVSSMRLSRSASSSCGSSCGHGGWGPRSYPV 46
>03_05_0850 +
28206166-28206767,28207648-28207891,28208076-28208389,
28209013-28209067
Length = 404
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 405 TIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLP 253
++PP+SS PR +P P+ + P G +GE + P+P
Sbjct: 11 SLPPSSSSPRISPHSTPVSLTSATPSGVHRPPGCGRLDTVGEGSELLDPIP 61
>07_01_0432 + 3290546-3291911,3291972-3291988
Length = 460
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 396 PASSLPRGAPPPRPIGWYCCAYG-SLS*APATG 301
PA +P GAPP PI W A G S++ APA G
Sbjct: 228 PAPPVPPGAPPVLPI-WDAMAPGPSIAPAPAPG 259
>04_04_0176 - 23329589-23331043
Length = 484
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 221 YDRAPPRQAPMGNGDMYSRRSPMRGGAPVAGAYDRD 328
+ + PP Q P NGD + R R G P G + D
Sbjct: 350 HQQKPPMQQPNRNGDYGTVRGTARRGRPAGGRNEGD 385
>03_06_0236 - 32545561-32546961
Length = 466
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 396 PASSLPRGAPPPRPIGWYCCAYG-SLS*APATG 301
PA +P GAPP PI W A G S++ APA G
Sbjct: 230 PAPPVPPGAPPVLPI-WDAMAPGPSIAPAPAPG 261
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = -2
Query: 399 PPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPI 250
PP S+LP + P +P G GSLS TG PP M + +PLPI
Sbjct: 329 PPPSALPNNSFPLQPPG------GSLSTLSYTGPPPLM--NIMPRNPLPI 370
>07_01_0951 -
8001093-8001344,8001475-8001990,8002057-8002209,
8002272-8002568
Length = 405
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 210 PQLPMTELLRDRRLWATVICTADAHPCAAEH 302
P L + ELLR R L TV+ T P AA H
Sbjct: 24 PMLQLAELLRGRGLAVTVVRTTFNAPDAARH 54
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 399 PPASSLPRGAPPPRPIGWYCCAYGSLS*APATGA---PPRMGERRLYISPLPIGA 244
P +++ R + P+ G Y G L APA GA PP G + L+++P P+ A
Sbjct: 455 PRPANMARHSSSPKHFG-YAPNSGVLP-APAIGAHHIPPSDGMQPLFVAPAPVAA 507
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 212 WARRSAGAERAYPSYHDHHTLVLADHPHTLPSHPY 108
W R+ Y YH HH + P T HP+
Sbjct: 145 WLHRALHHHWLYARYHSHHHASIVTEPITSVIHPF 179
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 396 PASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPI 250
P SS G P P P A+GS PA GAPP G + P P+
Sbjct: 114 PPSSGSSGFPFPMPSPLPLPAHGS----PAAGAPPSSGSGLPFPLPFPL 158
>01_03_0259 -
14312197-14312259,14312384-14312456,14312651-14312754,
14313073-14313192,14313278-14313364,14313925-14314023,
14314110-14314203,14314298-14314368,14315258-14316040
Length = 497
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -2
Query: 405 TIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLP 253
++ ASS P PPP P A G S A A G Y S LP
Sbjct: 42 SLADASSPPPSPPPPHPSSSSAAAQGPSSSYSAAAAAGAGGASTSYASSLP 92
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 66 TTYLWLTVVHAAMAVWMRWQCMRMIGEHQCMMIVIRWIGALRPGRPPCPQLPMTEL 233
T+ LW + +HA V + +R +G ++++ W + PG P P E+
Sbjct: 85 TSKLWCSDLHAGRVVPAARETLRNLGMDYVDLLLVHWPATVAPGSYDFP-FPKEEM 139
>05_04_0146 + 18393447-18394043
Length = 198
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 396 PASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPIGA 244
P +SLP A PP P A + S +P P G + ++P A
Sbjct: 78 PPASLPPSASPPPPEREAAAAMAAASASPPWAPSPARGRTKAAVAPAAAAA 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,642
Number of Sequences: 37544
Number of extensions: 495179
Number of successful extensions: 2010
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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