Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E06
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   2.3  
Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    29   3.0  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    29   3.0  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
 Frame = +2

Query: 221 YDRAPPRQAPMGNGDMYS--RRSPMRGGAPVAGAYDRDPYA-QQYQPM 355
           Y   PP   P  NG      R  P+  G P  G Y   P A Q YQ M
Sbjct: 128 YGGVPPPHYPSSNGPSQQGYRPGPVTNGPPPQGQYPPPPQAPQNYQQM 175


>Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical
           protein ZK265.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 233 PPRQAPMGNGDMYSRRSPMRGGAPVAGAYDRDPYAQQYQ 349
           PP  AP+    ++   SP    APVA A+D  P AQ Y+
Sbjct: 337 PPPPAPVAPPKLHDYESP----APVADAHDAAPAAQPYK 371


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 408 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATG-APPRMG 283
           G I P S  P G P P P   +      ++  PA G  PP+MG
Sbjct: 176 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMG 218


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 408 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATG-APPRMG 283
           G I P S  P G P P P   +      ++  PA G  PP+MG
Sbjct: 173 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMG 215


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 417 YLRGTIPPASSLPRGAPPPRPI 352
           Y     PPA + P+G PPP P+
Sbjct: 233 YQNSPEPPAQAGPKGVPPPAPL 254


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 408 GTIPPASSLPRGAPPP 361
           GTIP A   P GAPPP
Sbjct: 339 GTIPRARLAPNGAPPP 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,110
Number of Sequences: 27780
Number of extensions: 363989
Number of successful extensions: 1190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)