Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E04
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    33   0.040
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    30   0.28 
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   2.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   3.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   3.5  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   6.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.0  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 6   LHMDKGIWGDPENFRPERFIVDGQLCVAKDQSLPFGAGKRLCAGETFA 149
           LH D  ++ +PE F P+R+  +G    +    + FG G  +C G+ +A
Sbjct: 419 LH-DSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYA 465


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 102 LPFGAGKRLCAGETFARQIMFQVFAGFMQAF 194
           LPFGAG+  C GE FA   +  + + F+  +
Sbjct: 433 LPFGAGRHRCIGEQFAYMHLSTIISKFVHDY 463


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 24  IWGDPENFRPERFIVDGQLCVAKDQSLPFGAGK 122
           +W DP NF+  RF  +GQL  +   ++ + AGK
Sbjct: 221 LWYDPINFKYLRFNKNGQLNSSSVTAIKWVAGK 253


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 408 IKIVTYQVGGG*I-GLMLKLRVVTLHFNGFETHLELTIYXKYSKIRNTLV 554
           IK++T  +G   +  ++L L  + LHF GF  H     Y      RNT V
Sbjct: 217 IKVITKILGAAVVTSIVLLLEKIFLHFIGFHYHEVQYQYRITDNKRNTAV 266


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 188 LHKTSEHLEHYLTSKCFPSAKSFPSSKRQRLVLSNTKLSIDNE 60
           LHK S +L    TS    S + FPSS   +L   ++ LS+  E
Sbjct: 62  LHKPSTNLGSLKTSSLLASDEVFPSSVMPQLRPLDSSLSVSPE 104


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 95  PIVAFWSWEKTLRWGNICSSNNVPSV 172
           PI+A  SW+KTL++ ++  S  + +V
Sbjct: 131 PILATGSWDKTLKYWDLRQSTPIATV 156


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 145 NVSPAQSLFPAPKGNDWSLATQSCPSTMN 59
           NV   +SL   P+  +W   +  CPS  N
Sbjct: 289 NVETGESLGSFPRSGNWYTKSSWCPSNSN 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,521
Number of Sequences: 5004
Number of extensions: 61361
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)