Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E03
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      36   0.004
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   2.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   3.9  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   6.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   6.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.0  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 45  ISLTHHHFKTTEWDATTIYFLNFIYSFSFCFRFTFA-YIFSADKNKKLVFLHSFVFFRLG 221
           + L +HH  T   +A   +F  F + FS C RF  A +I   D N    F   F F    
Sbjct: 59  LKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFS 118

Query: 222 IYEMLFS 242
            +  LF+
Sbjct: 119 FFSFLFT 125


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 96  IYFLNFIYSFSFCFRFTFAYIFSADKNKKLVFLHSFVFFRLGIYEMLFSLT 248
           ++FL+F +SFSF F  +  +I        L FL  F          LFSL+
Sbjct: 124 LFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLS 174



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 99  YFLNFIYSFSFCFRFTF--AYIFSADKNKKLVFLHSFVFFRLGIYEMLFSLTPKEHM 263
           +FL F  SFSF F F F  + IF          LH   FF L +   L  L    H+
Sbjct: 121 FFLLFFLSFSFSFSFLFFLSQIFIV-YFSSFPILHFLFFFFLCVCVFLSFLFSLSHL 176


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 72  TTEWDATTIYFLNFIYSFSFCFR-FT-FAYIFSADKNKKLVFLHSFVFFRLGIYEMLFSL 245
           +T   ATT  + ++ YS S+  R FT    IF+   + +L+     + F LG+  MLF L
Sbjct: 504 STSATATTTVYTSY-YSPSYSARSFTGTGSIFTISSSSRLILSFKTLVFGLGVTAMLFVL 562


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 36  ENGI-SLTHHHFKTTEWDATTIYFLNFIYSFSFCFRFTFAYIFSAD 170
           E GI SL   + K   W    + +L+F   F F F F+FA+ F  D
Sbjct: 45  EGGIHSLLFFYPKRNWWFFIKMRYLSFF--FEFFFLFSFAFAFDFD 88


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 167 SGKNIRKSKSKTKRERVDKIQKINSSRIPLSSFEVMVRQ 51
           S K  +  K K K+E+ DK++K  S R+ L       R+
Sbjct: 138 SSKREKSKKKKEKKEKKDKLKK-KSKRLKLDDSHTQKRK 175


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 167 SGKNIRKSKSKTKRERVDKIQKI 99
           SGKN R +K KTK+ ++  I ++
Sbjct: 458 SGKNARTAKYKTKKHQLKAISEV 480


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 108  NFIYSFSFCFRFTFAYIFSADKNKKLVFLHSFVFFRLGIYE 230
            N  + +S     T  Y F   K   L F+H  +  + GIYE
Sbjct: 1077 NVQFPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYE 1117


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  IYFLNFIYSFSFCFRFTFAYIFSA 167
           + F  +++ +S+   F F Y+F A
Sbjct: 420 VTFFQYLHDYSYIATFVFTYVFQA 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,339
Number of Sequences: 5004
Number of extensions: 35321
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)