Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E02
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   0.99 
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   1.7  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   7.0  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   7.0  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   7.0  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   7.0  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   7.0  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   9.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.2  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -2

Query: 234 MEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSINNVSCF 55
           M   ++  F+  FV  T      ++ + L     R   + I+D F+G   NP +  +  F
Sbjct: 151 MSVAIITAFVCTFVLYTG---TLLFGDRLFDKPHRLSGNPIYDAFMGACLNPRLGKLLDF 207

Query: 54  FIFTEI*VLHFRIKHIS 4
            +F E+ +  F +  IS
Sbjct: 208 KMFFEVRIPWFILFFIS 224


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = +1

Query: 34  LNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKEL 213
           L FG NE     +   +E    K    L DP SL   T    ++ I F G+   K   +L
Sbjct: 219 LGFGANEAYRRYLGLLIESENGKVGNTLSDPCSLRGRTYD--IDGIEFAGTGDLKQCLKL 276

Query: 214 TQDRPFHVNKDK 249
           T +    +NKDK
Sbjct: 277 TYNL---LNKDK 285


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 180 LKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSIN 70
           +++  +  +T+   V R    +  DTF+G++F    N
Sbjct: 189 IRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTN 225


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 328 ELPYVGEESSLLVVLPNKIDGLHALEEKLKKD 423
           EL Y G++  +  +LPN ++    LEE+ K +
Sbjct: 376 ELLYPGKDEDIDTILPNVLEYYRHLEEEEKDE 407


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 44  VKMKKQLTLLILGLKTTPINVS 109
           + + +QLT+L+ G+ +TPI V+
Sbjct: 77  ISIYQQLTILLFGVLSTPITVN 98


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 80  GLKTTPINVSKIWWILVRWTVAHSVF 157
           GL    + ++K WW ++ WTV ++ F
Sbjct: 188 GLNGKKMYITK-WWDMINWTVVNNRF 212


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +1

Query: 43  GKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKELTQD 222
           G N   +  + +    +T+K+++ LV  SS+  + + +L+++  F G      + +LT+D
Sbjct: 343 GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELLLMSSSSFNGHSVSVQEYDLTKD 402


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 67  IINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYF 177
           +++ W  D  ++  + +   S +DSS+QC+    + F
Sbjct: 316 LVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSF 352


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 142 YCPTN*DPPNF*YVYWCGLQPK 77
           YC +N    +  Y+ WCG Q K
Sbjct: 245 YCQSNQTETSLHYLCWCGKQEK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,875
Number of Sequences: 5004
Number of extensions: 43254
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)