Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E01
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   2.4  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    24   4.2  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    24   5.5  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    24   5.5  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    24   5.5  
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc...    23   9.6  

>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 136 NSSTMASCLGVRHDPVNT*TLDRFEHSNLFKVKLSAHLDTHRRAP 2
           +SST  S L      V+T  +  FE     +V+ S HL+ + ++P
Sbjct: 29  SSSTQVSSLSASGISVSTPRVSPFEPERNMQVQSSQHLEANVQSP 73


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 100 HDPVNT*TLDRFEHSNLFKVKLSAHLDTHRRA 5
           HDPV+  +L  F  SN F  KL   L    ++
Sbjct: 176 HDPVDHKSLKNFYSSNYFAEKLIDQLKNREKS 207


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 154 RFRNIFNSSTMASCLGVRHDPVNT*TLDRFEHSNLFKVKLSAHLDT 17
           +  N+FNSST    L + H+ +    L R +  +  K       DT
Sbjct: 486 KVNNVFNSSTNRFELSIEHEQIEPFALLRLKCRDFIKYIEEDQADT 531


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 115 CLGVRHDPVNT*TLDRFEHSNLFKVKLSAHLDTH 14
           CLG    P N  TL    H +  + +  +H D H
Sbjct: 336 CLGCLTHPNNATTLAALNHISALEKETISHTDLH 369


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 93  GSWRTPRHEAIVELLKIFLNRSDECRV 173
           GS    R + IVE ++I ++   ECR+
Sbjct: 112 GSESASRKDVIVENVQISISTGSECRI 138


>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 182

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 70  GLGFMYLQGRGVPQDTKP 123
           GLGF +LQ RG+    +P
Sbjct: 11  GLGFQWLQKRGIGSLKRP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,352
Number of Sequences: 5004
Number of extensions: 13282
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)