Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_E01
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    29   0.86 
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695...    27   3.5  
06_03_1407 - 29954374-29954738,29955939-29958558                       25   8.0  

>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 57   ECSKRSRVYVFTGSWRTPRHEAIVEL 134
            EC+K ++ Y+F  S  TP  E +V+L
Sbjct: 2346 ECNKEAKAYMFAPSGHTPATELLVKL 2371


>08_02_0925 -
           22668875-22668889,22668942-22669018,22669383-22669500,
           22669662-22669685,22670067-22670360,22670456-22670563,
           22671098-22671946
          Length = 494

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 90  TGSWRTPRHEAIVELLK 140
           TGS+  PR EAI+EL K
Sbjct: 385 TGSYSKPREEAIIELAK 401


>06_03_1407 - 29954374-29954738,29955939-29958558
          Length = 994

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 127 TMASCLGVRHDPVNT*TLDRFEHSNLFKVKLSAH 26
           T+A+C    H P+   TL    H NL    LS H
Sbjct: 100 TIAACCLPGHVPLELPTLPSLRHLNLSNNNLSGH 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,534,575
Number of Sequences: 37544
Number of extensions: 92797
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)