Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D22
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    29   0.63 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   0.84 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   3.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   4.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   5.9  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   5.9  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   5.9  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 250 GFDATCSLVALDKNGNPMAVNNSEDNERNIIMWMDHRAQVEADLINKTN 396
           G   T   +A   NGN +A   S DN+ N+ +W+   +  +   I+ TN
Sbjct: 465 GHTNTVWALAFSPNGNTLA---SADNDGNVFLWIKISSNEDVATIDSTN 510


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 322  DNERNIIMWMDHRAQVEADLINKTNHKILKYVGGKVSLEMEMPKLLW-LKKNLPSKWSDF 498
            D E N  MW+  +  +    I K + +I+K V  + S      +L+W L  N+    S F
Sbjct: 3406 DTENNSAMWVAKKVNLSPSYIEKMDTEIMKLVPVRFSNTPTTLRLMWTLFANVEKPGSTF 3465


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 227 SMSLITSFITVKQQFHISSDDC 162
           +++ +T FI  KQ+ H+S+D C
Sbjct: 719 TVTFLTDFIIRKQKAHLSADQC 740


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 287 LSRATREHVASKPIPL-MVVGSMSLITSFITVKQQF 183
           +S    E+ ASK +PL +V+G +SL  S I++ Q F
Sbjct: 310 VSNTLEEYFASK-LPLYVVIGQLSLYGSIISIIQTF 344


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 NKTNHKILKYVGGKVS 432
           N  NHKILKYV G ++
Sbjct: 502 NDVNHKILKYVIGAIN 517


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 115 SVKDIQVWKLKAGFYEQSS-DDIWNCCLTVMKEVIKDIDPTTIK 243
           S KD +V KL+A   E S+ DD+ +  L    E + D+DP+T +
Sbjct: 155 SAKD-KVQKLEAEIEELSTADDVDDVLLESKYEELDDMDPSTFE 197


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 205 KEVIKDIDPTTIKGIGFDATCSLVALDKN 291
           +E+I D   T ++G  +DA  S+   DKN
Sbjct: 132 REIIADSIETVMQGQWYDANVSIPGCDKN 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,657
Number of Sequences: 5004
Number of extensions: 50618
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)