Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D22
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430...    88   4e-18
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123...    31   0.65 
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950     30   1.5  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     29   2.6  
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    29   3.4  

>02_01_0580 +
           4303020-4303211,4303838-4303879,4304538-4304646,
           4304731-4304859,4305002-4305121,4305223-4305343,
           4305888-4306044,4306377-4306427,4306573-4306695
          Length = 347

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 39/73 (53%), Positives = 54/73 (73%)
 Frame = +1

Query: 274 VALDKNGNPMAVNNSEDNERNIIMWMDHRAQVEADLINKTNHKILKYVGGKVSLEMEMPK 453
           VA+D +G+P++V+ + D  RNII+WMDHRA  +A+ IN  N  +L+Y GG VS EM+ PK
Sbjct: 5   VAVDADGSPVSVSWTGDARRNIIVWMDHRAVDQAERINARNSPVLQYCGGGVSPEMQAPK 64

Query: 454 LLWLKKNLPSKWS 492
           LLW+K+NL   WS
Sbjct: 65  LLWVKENLQESWS 77


>01_06_0433 -
           29311749-29311859,29311958-29312116,29312208-29312315,
           29312449-29312531,29312617-29312786,29312833-29312903,
           29313170-29313302,29313483-29313749,29313865-29313969,
           29314053-29314144,29314263-29314363,29314426-29314552,
           29315025-29315140,29315222-29315291,29315476-29315685
          Length = 640

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 421 GKVSLEMEMPKLLWLKKNLPSKWSDFGYFFDLPD--FLTWKATKSMSRSL 564
           G+V+ EM M KL ++   L  +W   G F   PD    +W+   +  R L
Sbjct: 79  GRVAAEMNMKKLTYIGMELQFEWDQVGAFVRQPDGSLFSWRERFACFRHL 128


>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
          Length = 369

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 417 HIFKYLMICFID*VSFHLCSMIHPH 343
           H+  ++++  +D  +FH C  +HPH
Sbjct: 123 HLLDHVLVVAVDPAAFHHCRAVHPH 147


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 482 EGRFFFNQRSFGISISRLTFPPTYLSI 402
           +G+F+FN R   IS+   T  PT+ SI
Sbjct: 154 QGKFYFNARFHNISVLEFTPEPTFSSI 180


>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
            28442918-28443105,28444300-28444327,28444880-28444907,
            28444942-28445163,28445238-28445409,28446224-28447468,
            28447573-28447741,28447820-28448045,28449096-28449451,
            28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 115  NCSKCDHCYPPRLHEHSQNLRQPQ*NTH-CCSYLFTYS 5
            +C KC+ C   +L EH    +  + N   CC +LFT S
Sbjct: 1050 HCMKCNCCLGMKLTEHKCREKGLETNCPICCDFLFTSS 1087


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,770,618
Number of Sequences: 37544
Number of extensions: 288192
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)