Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D20
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   0.52 
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    28   0.52 
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.6  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   2.8  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   4.9  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   4.9  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    24   6.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   6.4  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    24   6.4  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    24   6.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    24   6.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    24   6.4  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 5   DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 136
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 198 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 82
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 128 FKKFDTPFMKSSWEPNFGFSL 190
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 44  FINRNDYSLDGKLNLFKSPDTSVD 115
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 32  AHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFMKS 160
           +H +F + ND+S   KLN   S  +       +K+   PF K+
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTKT 200


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 346 ELKLYLLGGHYFIHLH*RNIHLVISFNAKIIQYISKFRYIELV 218
           E  LY     YF+HL   N+ +++      +  ISK  +  ++
Sbjct: 423 ERALYFFNNDYFVHLVEENVDIILPIIYPALFEISKSHWNRVI 465


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 35  HTDFINRNDYSLDGKLNLFKSPDT 106
           HT  +N  D+S DG+  L  S DT
Sbjct: 44  HTGCVNTLDWSADGEFLLSGSDDT 67


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 159 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSL 1
           DF K   N L           ++  FSF SRE S R +K + +A+   P L +
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRM 628


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 192 ESENPKLGSQEDFMK 148
           +S+NP LGS+ED +K
Sbjct: 372 DSKNPVLGSEEDTLK 386


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 53  RNDYSLDGKLNLFKSP-DTSVDFNAGFK 133
           RNDY  DG  + ++SP  ++VD N+ ++
Sbjct: 5   RNDYHYDGNDHQYRSPLKSNVDQNSFYE 32


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 168 NLTSDSHSLNISNQYLPTNS 227
           N +SDS  LN  N++LP +S
Sbjct: 276 NTSSDSQRLNHQNRHLPDDS 295


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 163 GGLHE-GCIELLEAGVEIDRGVRTLEEVQLSVQGVIVTID 47
           GG +  GC+++++   EID  VR  + V   +  V +T +
Sbjct: 535 GGRYSIGCVKVIDPETEIDYAVRVAKSVDCVILCVGLTAE 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,461
Number of Sequences: 5004
Number of extensions: 19313
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)