Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D19
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   175   2e-45
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   4.2  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   5.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   5.5  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    24   7.3  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    24   9.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  175 bits (426), Expect = 2e-45
 Identities = 86/115 (74%), Positives = 97/115 (84%)
 Frame = +1

Query: 49  AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRIIRELTSVVQKRFI 228
           AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGR IRELT++VQKRF 
Sbjct: 21  AELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFK 80

Query: 229 IPEQSVELYAEKVATRGLCAIAQAESLRYILIGGLAVRRACYGVLRVIMDSGARG 393
             E +VELYAEKV  RGLCA+AQ ESLRY L+ GLAVRRA YGVLR +M++GA+G
Sbjct: 81  FAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKG 135



 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 6  ISKKRKFVGDGVY 44
          ISKKRKFV DGV+
Sbjct: 7  ISKKRKFVADGVF 19


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 87  GWLLRCGGAC 116
           GWL  CGGAC
Sbjct: 70  GWLHNCGGAC 79


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 190 IRELTSVVQKRFIIPEQSVELYAEKVATRGLCAIAQAESLRYILIG 327
           I+  T    KRF+I   +  +Y+ KVA++G   +  ++  R  + G
Sbjct: 30  IKNPTPETGKRFVISPHAGYMYSGKVASQGFQQLDFSKIQRVFVFG 75


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 323 IKIYLRDSA*AIAQSPRVATFSAYSSTDCSGIINRFCTTDVSSRIIRPFSPST 165
           +++ L+    A+     ++      S+     +N F  T  SSR + PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 240 VSGAIRREGSNPRALRYRS 296
           VSG IR +G  P    YRS
Sbjct: 81  VSGTIRFDGKKPHVFSYRS 99


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  KNENSSVMEFIRAELNEFLTRELAEDGYSGVEV 111
           K +N +V +F + E+N  +   + E+G    EV
Sbjct: 479 KLQNETVKQFQKGEVNTLIATSIGEEGLDIGEV 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,583
Number of Sequences: 5004
Number of extensions: 26374
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)