Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D19
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   196   7e-51
08_01_0346 - 3063440-3064189                                           30   0.58 
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    29   1.3  
10_08_0211 + 15899017-15901392                                         29   1.8  
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685...    27   7.1  
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954...    26   9.4  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  196 bits (477), Expect = 7e-51
 Identities = 97/115 (84%), Positives = 104/115 (90%)
 Frame = +1

Query: 49  AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRIIRELTSVVQKRFI 228
           AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR IRELTSVVQKRF 
Sbjct: 21  AELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 80

Query: 229 IPEQSVELYAEKVATRGLCAIAQAESLRYILIGGLAVRRACYGVLRVIMDSGARG 393
            PE  VELYAEKV  RGLCAIAQAESLRY L+GGLAVRRACYGVLR +M+SGA+G
Sbjct: 81  FPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 135



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +3

Query: 6  ISKKRKFVGDGVY 44
          ISKKRKFV DGV+
Sbjct: 7  ISKKRKFVADGVF 19


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 298 AESLRYILIGGLAVRRACYGVLRV 369
           A S   +L+GG A   ACYGVLR+
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLRL 244


>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 61  EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR---IIRELTSVVQKRFII 231
           +F+T ++  DG++ VE R   ++ + +++ +R    +G  G     ++   S+ +KR I+
Sbjct: 150 QFVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDGSDEFAVQMFDSLARKRGIV 209

Query: 232 PE 237
            +
Sbjct: 210 KQ 211


>10_08_0211 + 15899017-15901392
          Length = 791

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 95  TPVWRCVSHPYVQKSLLWPQ 154
           T +W  +SH  +Q+S LWPQ
Sbjct: 696 TQIWAILSHCNIQESNLWPQ 715


>06_03_0311 +
           19466258-19466303,19466496-19467087,19468059-19468524,
           19470028-19470081,19470112-19470226,19470499-19470605
          Length = 459

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -2

Query: 170 STLCVLVAIIMISERMGVTR 111
           ++LCVL+ I++ISE +GV R
Sbjct: 3   TSLCVLLCILVISEVVGVPR 22


>03_06_0347 +
           33293915-33294104,33295143-33295284,33295365-33295485,
           33295590-33295652,33296524-33296553,33297411-33297905
          Length = 346

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 192 NYTTFLSKHALRPCGHNNDF*TYGCDTH 109
           N+TT  S+  ++    NN F TY CD H
Sbjct: 27  NFTTIASQCLMKLPASNNKF-TYNCDGH 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,417
Number of Sequences: 37544
Number of extensions: 210369
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)