Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_D19
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 188 2e-48
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z49132-12|CAA88990.3| 931|Caenorhabditis elegans Hypothetical p... 29 1.6
Z48716-7|CAA88602.3| 931|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 2.1
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 27 4.8
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 27 4.8
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 27 4.8
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 27 6.3
U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z99273-1|CAB16477.1| 645|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z82256-4|CAB05118.1| 636|Caenorhabditis elegans Hypothetical pr... 26 8.4
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 188 bits (457), Expect = 2e-48
Identities = 92/127 (72%), Positives = 107/127 (84%)
Frame = +1
Query: 13 KNENSSVMEFIRAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRII 192
K + + + +AELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GR I
Sbjct: 9 KKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRI 68
Query: 193 RELTSVVQKRFIIPEQSVELYAEKVATRGLCAIAQAESLRYILIGGLAVRRACYGVLRVI 372
+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRY L+GGLAVRRACYGVLR I
Sbjct: 69 KELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFI 128
Query: 373 MDSGARG 393
M+SGA+G
Sbjct: 129 MESGAQG 135
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 287 AQSPRVATFSAYSSTDCSGIINRFCTTDVSSRIIRPFSPSTLCVLVA 147
+ +P T AY T SG++ C+ D + RP C ++A
Sbjct: 114 SNTPTSTTTCAYIKTSSSGLVFDSCSIDANVLCDRPLQKQDYCSIIA 160
>Z49132-12|CAA88990.3| 931|Caenorhabditis elegans Hypothetical
protein F59B10.1 protein.
Length = 931
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 231 DNKSLLHNRCQLTNYTTFLSKHALRPCGHNNDF*TYGCDTHLHTGVAI 88
DNKSL ++RC LT+ T + R H C + L G +
Sbjct: 613 DNKSLSYSRCSLTSTATNATSQPKRSRKHRAIKQAQSCGSRLSQGTVV 660
>Z48716-7|CAA88602.3| 931|Caenorhabditis elegans Hypothetical
protein F59B10.1 protein.
Length = 931
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 231 DNKSLLHNRCQLTNYTTFLSKHALRPCGHNNDF*TYGCDTHLHTGVAI 88
DNKSL ++RC LT+ T + R H C + L G +
Sbjct: 613 DNKSLSYSRCSLTSTATNATSQPKRSRKHRAIKQAQSCGSRLSQGTVV 660
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 157 TQSVLGEKGRIIRELTSVVQKRFIIPEQSVELYAEKVATR 276
+ S+ G+KG+ +REL + + K + E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 27.1 bits (57), Expect = 4.8
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 16 NENSSVMEFIRAELNEFLTRE-LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRII 192
N+ V + EL E RE L E GY G V I + Q +GE+ +
Sbjct: 175 NKVDEVPDAETRELVEMDIREQLNEFGYPGDTCPV--IFGSALCALEGKQPEIGEEA--V 230
Query: 193 RELTSVVQKRFIIPEQSV 246
++L V+ +F+IPE+ V
Sbjct: 231 KQLLEVLDNKFVIPERKV 248
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 27.1 bits (57), Expect = 4.8
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 16 NENSSVMEFIRAELNEFLTRE-LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRII 192
N+ V + EL E RE L E GY G V I + Q +GE+ +
Sbjct: 176 NKVDEVPDAETRELVEMDIREQLNEFGYPGDTCPV--IFGSALCALEGKQPEIGEEA--V 231
Query: 193 RELTSVVQKRFIIPEQSV 246
++L V+ +F+IPE+ V
Sbjct: 232 KQLLEVLDNKFVIPERKV 249
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 27.1 bits (57), Expect = 4.8
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 16 NENSSVMEFIRAELNEFLTRE-LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRII 192
N+ V + EL E RE L E GY G V I + Q +GE+ +
Sbjct: 176 NKVDEVPDAETRELVEMDIREQLNEFGYPGDTCPV--IFGSALCALEGKQPEIGEEA--V 231
Query: 193 RELTSVVQKRFIIPEQSV 246
++L V+ +F+IPE+ V
Sbjct: 232 KQLLEVLDNKFVIPERKV 249
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 79 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRIIRELTSVVQKRFIIPEQ 240
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 79 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRIIRELTSVVQKRFIIPEQ 240
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical
protein M02D8.5 protein.
Length = 669
Score = 26.6 bits (56), Expect = 6.3
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 43 IRAELNEFLTRELAED-----GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRIIRELTS 207
IR + +F T + +D G +G V++T +E + Q+ I + S
Sbjct: 94 IRFAVYDFYTNQNQKDSFFITGSNGQNVKITGFATEDEPVVYYFQNGANAIFSITHQDHS 153
Query: 208 VVQKRFIIPEQSVELYAEK 264
+QKRF I +S E+ AEK
Sbjct: 154 FIQKRFYILVKSYEIAAEK 172
>Z99273-1|CAB16477.1| 645|Caenorhabditis elegans Hypothetical
protein Y45F10C.1 protein.
Length = 645
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -1
Query: 192 NYTTFLSKHALRPCGHNNDF*TYGCDTHLHTGVAILGQLPREELIELR 49
NY+T+LS+ + C ++ TY ++ + A+ G++ E L ++
Sbjct: 43 NYSTYLSRFHQKLCPQISNMDTYSVESRIRLLFALSGKVSDEFLARMQ 90
>Z82256-4|CAB05118.1| 636|Caenorhabditis elegans Hypothetical
protein B0513.6 protein.
Length = 636
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -1
Query: 192 NYTTFLSKHALRPCGHNNDF*TYGCDTHLHTGVAILGQLPREELIELR 49
NY+T+LS+ + C ++ TY ++ + A+ G++ E L ++
Sbjct: 43 NYSTYLSRFHQKLCPQISNMDTYSVESRIRLLFALSGKVSDEFLARMQ 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,244
Number of Sequences: 27780
Number of extensions: 155045
Number of successful extensions: 429
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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