Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_D18
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   1.5  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   2.0  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.0  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 57  HVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDISDC*EKALNFIKQLL 236
           HV  N +      V    A+K Y +H  ++W     + +  LP +SD  E   N+ ++++
Sbjct: 136 HVHKNDINRFGTKVYEELARK-YPQHSLESWRQHYKYMKKRLPPVSDSDES--NYCQRII 192

Query: 237 MKFTSSSCNLKQ 272
           +K  SS  +  Q
Sbjct: 193 VKPYSSQKDYTQ 204


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 397 KNIEIKILHSLCNLFLFLITMLFVNELNN*RNPTYLLASYFCTL 528
           K+I I+++ S  N      T  F+N  N  RN   L +S+F  L
Sbjct: 237 KDIYIRVICSFVNTGFIDSTNWFLNSFNQRRNSLQLYSSWFIIL 280


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 402 IFVKIQKLWIIVPIKLW*EICQLFLDDFRFLNISIMHNIL 283
           + +K+     +VPIK W    QL L D   L   +++NI+
Sbjct: 1   MLLKVSSCEPLVPIKQWIHTSQLDLSDSSSLVADLLYNII 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,691
Number of Sequences: 5004
Number of extensions: 46865
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)